wgs_function: [Compiled wgs analyisis
In dlemas/microbes: tools for analyzing microbiome data

Description Usage Arguments Author(s) Examples

this function reformats WGS data to prepare it for analyisis

1	wgs_function(df, pathway.file)

`df`	wgs.counts or wgs.ra
`pathway.file`	A file referencing the pathway category to which each cog belongs

atomczik

##---- Should be DIRECTLY executable !! ----
##-- ==>  Define data, use random,
##--	or do  help(data=index)  for the standard data sets.

## The function is currently defined as
function (df, pathway.file) 
{
    cog.path <- cog.path.ref(pathway.file)
    cog.cv.ra <- cog_cv_ra(df)
    cog.path.cv.ra <- merge(cog.path, cog.cv.ra, by = "cog.name")
    cog.path.cv.ra <- cog.path.cv.ra[order(cog.path.cv.ra$pathway.name), 
        ]
    return(cog.path.cv.ra)
  }