tcgaClinic: Combine the interesting genes with the corresponed clinical...

Description Usage Arguments

View source: R/tcgaClinic.R

Description

use the tcgaEnrichment() fuction to get the enrichment results of DEGs.

Usage

1
tcgaClinic(dataPath, clinical_data, transfromed = T, groupby = 0.5)

Arguments

dataPath

the direction of download Data

clinical_data

the downloaded clinical.tsv Data

groupby

the quantitle threshold to determine the gene is relatively high expression or low expression in samples,and the range is 0.1~0.9.

transformed

default is Ture,log2 transformed the gene expression,else not transform applied


dming1024/TCGApackages0226 documentation built on April 9, 2021, 7:48 a.m.