use the tcgaEnrichment() fuction to get the enrichment results of DEGs.
1 | tcgaClinic(dataPath, clinical_data, transfromed = T, groupby = 0.5)
|
dataPath |
the direction of download Data |
clinical_data |
the downloaded clinical.tsv Data |
groupby |
the quantitle threshold to determine the gene is relatively high expression or low expression in samples,and the range is 0.1~0.9. |
transformed |
default is Ture,log2 transformed the gene expression,else not transform applied |
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