colon: Colon cancer data

In dnayyala/prepr: Mean vector testing using pre-pivoting roots

Description

The colorectal cancer data set, originally published in Alon et al. (1999) contains the expressions of 2000 genes collected from 62 tissues. The gene expression levels are reported in the descending order of minimal intensity.

Usage

colon

Format

A data frame with 2001 columns (variables) and 62 rows (samples). The first column represents the phenotype of the samples with "T" indicating tumor tissue and "N" indicating a normal tissue. The actual data containing the microarray expression values of 2000 genes across 62 patients is presented in the remaining columns.

Source

http://genomics-pubs.princeton.edu/oncology/

References

Broad patterns of gene expression revealed by clustering of tumor and normal colon tissues probed by oligonucleotide arrays; U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Ybarra, D. Mack, and A. J. Levine, Proc. Natl. Acad. Sci. , 96(12), pp. 6745-6750

See Also

colon.example.

dnayyala/prepr documentation built on March 28, 2020, 7:15 p.m.