Man pages for domingoscardoso/catGenes
Concatenating multiple DNA alignments and other phylogenetic features
| abbrevGen | Abbreviate genus name |
| alignSeqs | Automated multiple sequence alignment |
| Brongniartia | DNA alignments of the papilionid legume genus Brongniartia |
| catfullGenes | Compares gene datasets for combined phylogenetic analysis |
| catGenes-package | Tools for combining individual DNA alignments for multigene... |
| catmultGenes | Compares gene datasets for combined phylogenetic analysis... |
| convertAlign | Convert any format of DNA alignment into another format |
| Cryptocarya | DNA alignments of the genus Cryptocarya (Lauraceae) |
| dropSeq | Removes duplicated accessions of the same species in DNA... |
| fastadframe | Writes a FASTA-formatted DNA dataset from a... |
| Gaya | DNA alignments of the genus Gaya (Malvaceae) |
| GenBank_accessions | Dataframe with GenBank accessions numbers |
| Harpalyce_bayes_tree | Bayesian tree of the papilionoid legume genus Harpalyce |
| Harpalyce_parsimony_tree | Parsimony tree of the papilionoid legume genus Harpalyce |
| Harpalyce_raxml_tree | RAxML tree of the papilionoid legume genus Harpalyce |
| Luetzelburgia | DNA alignments of the legume genus Luetzelburgia |
| mineMitochondrion | Read and download targeted loci from mitochondrial genomes in... |
| minePlastome | Read and download targeted loci from plastome sequences in... |
| mineSeq | Read and download DNA sequences from GenBank |
| nexusdframe | Writes a NEXUS-formatted DNA alignment from a... |
| Ormosia | DNA alignments of the pantropical legume genus Ormosia |
| phylipdframe | Writes a PHYLIP-formatted DNA alignment from a... |
| plotPhylo | Plot ggtree-based phylogenetic tree |
| run_catGenes | Run _catGenes_ under a Shiny Application |
| splitTips | Parse tip labels into a dataframe with multiple columns for... |
| Vataireoids | DNA alignments of the Vataireoid legumes |
| Vochysiaceae | Plastome dataset of Vochysiaceae (Myrtales) |
| writeNexus | Writes a concatenated (non-interleaved) or combined... |
| writePhylip | Writes a PHYLIP-formatted file of fully concatenated gene... |
