prot_seq_check: Check a protein sequence

In dongminjung/GenProSeq: Generating Protein Sequences with Deep Generative Models

Check a protein sequence

Description

The protein sequence dataset is filtered by eliminating sequences containing the non-amino acid characters (digits and blank spaces) from the amino acid sequences. A valid amino acid sequence means a string that only contains capital letters of an alphabet and a hyphen for a gap.

Usage

prot_seq_check(prot_seq, label = NULL)

Arguments

prot_seq	amino acid sequences
label	label (default: NULL)

Value

valid sequences

Author(s)

Dongmin Jung

References

Mukhopadhyay, C. S., Choudhary, R. K., & Iquebal, M. A. (2017). Basic Applied Bioinformatics. John Wiley & Sons.

Examples

prot_seq_check(example_PTEN[1])

dongminjung/GenProSeq documentation built on May 3, 2022, 10:28 p.m.