ORA: Over-representation Analysis

Description Usage Arguments Value Author(s) See Also Examples

Description

the result from the over-representation analysis

Usage

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ORA(pathways, gene.id, minSize = 1, maxSize = Inf,
    p.adjust.methods = NULL)

Arguments

pathways

list of gene sets

gene.id

set of genes

minSize

Minimal size of a gene set

maxSize

Maximal size of a gene set

p.adjust.methods

a correction method

Value

ORA result

Author(s)

Dongmin Jung, Xijin Ge

See Also

fisher.test

Examples

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data(examplePathways)
data(exampleRanks)
geneNames <- names(exampleRanks)
set.seed(1)
gene.id <- sample(geneNames, 100)
ORA(examplePathways, gene.id)

dongminjung/PPInfer documentation built on May 15, 2019, 10:41 a.m.