as_symbol: convert common gene ID (accession) to HUGO gene symbol

In dongzhuoer/hgnc: map common gene ID (accession) to HUGO gene symbol

Description

haha

Usage

as_symbol_from_symbol(symbol)

as_symbol_from_entrez(entrez)

as_symbol_from_ensembl(ensembl)

as_symbol_from_genbank(genbank)

as_symbol_from_entrez_or_symbol(entrez_or_symbol)

as_symbol_from_unigene(unigene)

Arguments

symbol	character. each element is a valid HUGO gene symbol, like 'ANKLE2'
entrez	character. each element is a valid entrez gene ID, like '503538'
ensembl	character. each element is a valid ensembl gene ID, like 'ENSG00000148584'
genbank	character. each element is a valid Genbank accession, like 'BX647329'
entrez_or_symbol	character. each element is a valid entrez gene ID or HUGO gene symbol, refer to vignette('content')
unigene	character. each element is a valid unigene ID, with or without Hs., like '41', 'Hs.96'

Value

character. corresponding HUGO gene symbol

Caution

as_symbol_from_genbank() ignores transcript id or version number, anyhow, the trailing .\\d.

dongzhuoer/hgnc documentation built on Aug. 7, 2020, 8:39 a.m.