Man pages for dongzhuoer/mcapomorphy
Molecular Classfication based on amino acid apomorphy
| augustus | wrapper to run AUGUSTUS |
| compare_sra_paired | compare fastqc result of original and trimmed sequence for... |
| compare_sra_single | compare fastqc result of original and trimmed sequence for... |
| fasta_to_nexus | convert fasta to nexus data block. |
| fastqc_path | return the full absolute path of the fastqc result |
| fetch | download many webpages parallelly |
| fetch_genome | download NCBI genome webpage for a vector of given id |
| file_url | browse fastqc html output view RStduio Server |
| hamstr_from_augustus | prepare hamstr input file from augustus gff |
| hamstr_from_ncbi_protein | prepare hamstr input file from ncbi protein |
| hamstr_from_oases | prepare hamstr input file from oases transcript |
| hamstr_from_TSA | prepare hamstr input file from ncbi TSA |
| hamstr_out_to_fasta | convert hamstr output file to FASTA format |
| parse_assembly | parse assembly metadata in xml format |
| parse_avibase | parse avibase species webpage |
| parse_genome | parse NCBI genome webpage |
| pkg_file | get files in the package |
| reexports | Objects exported from other packages |
| replace_ext | replace extension name |
| unnest_list | get the outermost list which contains more than one element |
| view_sra_paired | view fastqc result of original SRA sequence for paired ends |
| view_sra_single | view fastqc result of original SRA sequence for single ends |
| write_paup | perpare nexus file to run paup |
