brain: 7 brain cancer studies

Description Usage Format Source References

Description

7 brain cancer studies comparing Anaplastic Astrocytoma (AA) and Glioblastoma multiforme (GBM) samples.

Data Name Published Year Array Platform Sample Size GEO Accession ID
Freije 2004 HG-U133A,B 85 GSE4412
Phillips 2006 HG-U133A,B 100 GSE4271
Sun 2006 HG-U133 Plus 2 100 GSE4290
Yamanaka 2006 Agilent 29 GSE4381
Petalidis 2008 HG-U133A 58 GSE1993
Gravendeel 2009 HG-U133 Plus 2 175 GSE16011
Sun 2010 HG-U133 Plus 2 42 GSE19578

Usage

1

Format

A list containing 7 matrices. Each matrix is gene expression data after gene filtering.

Source

Gene Expression Omnibus (GEO)

References

Freije W, Castro-Vargas F, Fang Z, Horvath S, Cloughesy T, et al. (2004) Gene expression profiling of gliomas strongly predicts survival. Cancer research 64: 6503.

Phillips H, Kharbanda S, Chen R, Forrest W, Soriano R, et al. (2006) Molecular subclasses of high-grade glioma predict prognosis, delineate a pattern of disease progression, and resemble stages in neurogenesis. Cancer Cell 9: 157-173.

Sun L, Hui A, Su Q, Vortmeyer A, Kotliarov Y, et al. (2006) Neuronal and glioma-derived stem cell factor induces angiogenesis within the brain. Cancer cell 9: 287-300.

Yamanaka R, Arao T, Yajima N, Tsuchiya N, Homma J, et al. (2006) Identification of expressed genes characterizing long-term survival in malignant glioma patients. Oncogene 25: 5994-6002.

Petalidis L, Oulas A, Backlund M, Wayland M, Liu L, et al. (2008) Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data. Molecular cancer therapeutics 7: 1013.

Gravendeel L, Kouwenhoven M, Gevaert O, de Rooi J, Stubbs A, et al. (2009) Intrinsic gene expression profiles of gliomas are a better predictor of survival than histology. Cancer research 69: 9065.

Paugh B, Qu C, Jones C, Liu Z, Adamowicz-Brice M, et al. (2010) Integrated molecular genetic profiling of pediatric high-grade gliomas reveals key differences with the adult disease. Journal of Clinical Oncology 28: 3061.


donkang75/MetaQC documentation built on May 15, 2019, 10:41 a.m.