Files in dorolin/rearrvisr
Detect, Classify, and Visualize Genome Rearrangements
.Rbuildignore
.gitignore
.travis.yml
COPYING
DESCRIPTION
LICENSE
NAMESPACE
R/Drosophila_data.R
R/TOY24_data.R
R/blockUtility.R
R/checkInfile.R
R/computeRearrs.R
R/convertPQtree.R
R/filterRearrs.R
R/genome2PQtree.R
R/genomeImagePlot.R
R/genomeRearrPlot.R
R/getBreakpoints.R
R/orderGenomeMap.R
R/plotUtility.R
R/rearrUtility.R
R/rearrvisr.R
R/summarizeBlocks.R
R/summarizeRearrs.R
README.Rmd
README.md
data/MEL_markers.rda
data/MSSYE_PQTREE_HEUR.rda
data/SIM_markers.rda
data/TOY24_compgenome.rda
data/TOY24_focalgenome.rda
data/YAK_markers.rda
exec/convertPQtree.pl
exec/oma2anges.R
man/MEL_markers.Rd
man/MSSYE_PQTREE_HEUR.Rd
man/SIM_markers.Rd
man/TOY24_compgenome.Rd
man/TOY24_focalgenome.Rd
man/YAK_markers.Rd
man/checkInfile.Rd
man/computeRearrs.Rd
man/convertPQtree.Rd
man/filterRearrs.Rd
man/genome2PQtree.Rd
man/genomeImagePlot.Rd
man/genomeRearrPlot.Rd
man/getBreakpoints.Rd
man/orderGenomeMap.Rd
man/rearrvisr.Rd
man/summarizeBlocks.Rd
man/summarizeRearrs.Rd
rearrvisr.Rproj
tests/testthat.R
tests/testthat/test.assignOri3.R
tests/testthat/test.computeRearrs.R
tests/testthat/test.makeBlocks.R
tests/testthat/test.tagTP2.R
vignettes/Alignment.png
vignettes/Classes.png
vignettes/PQTree.png
vignettes/Toy24_compgenome.png
vignettes/bioinformatics.csl
vignettes/rearrvisr.Rmd
vignettes/rearrvisr.pdf
vignettes/rearrvisr_vignette.bib
