In dorolin/rearrvisr: Detect, Classify, and Visualize Genome Rearrangements

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)

rearrvisr

The R package rearrvisr provides functions to identify and visualize inter- and intrachromosomal translocations and inversions between a focal genome and an ancestral genome reconstruction, or two extant genomes. Rearrangements, breakpoints, and synteny blocks are identified along the focal genome and output in a tabular format. Rearrangements and synteny blocks can be visualized along the focal genome by two graphical functions.

Installation

You can install rearrvisr from GitHub using the devtools package:

## install and load devtools
install.packages("devtools")
library(devtools)

## install and load rearrvisr
install_github("dorolin/rearrvisr")
library(rearrvisr)

Example

For a brief overview of the functionalities of the package, type

?rearrvisr

A more detailed description of the package functions and a tutorial is provided in the package vignette.

dorolin/rearrvisr documentation built on Aug. 6, 2020, 1:32 a.m.