Man pages for dosreislab/bppr
An R package for BPP
| bayes.factors | Calculate Bayes factors and posterior model probabilities |
| gauss.quad | Estimate marginal likelihood by thermodynamic integration |
| hominids | A BPP A00 MCMC sample for an hominid phylogeny |
| make.beta | Make beta values for marginal likelihood calculation |
| make.bfctlf | Prepare mcmctree or bpp control files for marginal likelihood... |
| mcmc2densitree | Plot a densi-tree from an MCMC sample |
| mcmc2multiphylo | Convert an MCMC sample from BPP or MCMCTree to a list of... |
| mcmc.summary | MCMC summary |
| microcebus | A BPP A00 MCMC sample for a mouse lemur phylogeny |
| msc2time | Time-calibrate a multi-species phylogeny |
| ShiftedLognormal | The Shifted Log-normal Distribution |
| stepping.stones | Estimate marginal likelihood by stepping stones |
