seqinfo.cool: Accessing the sequence information in a cool/mcool file
In dovetail-genomics/coolR: Convert Cooler HDF5 Contact Matrix To InteractionSet Objects
Description
Convering the chromosomes information from a HDF5 stored uni- or multi-dimentional
contact matrix (cool or mcool file) into a seqinfo object
Usage
1
seqinfo.cool(file, res = NULL)
Arguments
file
Path to a HDF5 stored cool (uni-dimension) or mcool (multi-dimension sparse matrix).
If using a multi-dimesion, the resolution of one of the dimension need to be passed to res
res
'NULL' if using a uni-dimensional cool file or the resolution of one of layer in the mcool file
dovetail-genomics/coolR documentation built on Oct. 7, 2020, 1:33 a.m.
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Description
Convering the chromosomes information from a HDF5 stored uni- or multi-dimentional contact matrix (cool or mcool file) into a seqinfo object
Usage
1 | seqinfo.cool(file, res = NULL)
|
Arguments
file |
Path to a HDF5 stored cool (uni-dimension) or mcool (multi-dimension sparse matrix). If using a multi-dimesion, the resolution of one of the dimension need to be passed to res |
res |
'NULL' if using a uni-dimensional cool file or the resolution of one of layer in the mcool file |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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