momspiMultiAssay: Make MOMS-PI MultiAssayExperiment
In dozmorovlab/HMP2Data: 16s rRNA sequencing data from the Human Microbiome Project 2
Description
Usage
Format
Value
Examples
Description
Construct MultiAssayExperiment for MOMS-PI 16S rRNA
and cytokines data.
Usage
1
Format
A MultiAssayExperiment object with a 16S rRNA matrix and Cytokine matrix
16S
A counts matrix for the 16S rRNA-seq results.
cytokines
A counts matrix for the cytokines results.
colData
- file_id
File identifier
- md5
md5 hash for the file
- size
file size
- urls
URL for the file
- sample_id
Sample identifier
- file_name
Filename which the sample was taken from
- subject_id
Participant identifier
- sample_body_site
Body site of the sample
- visit_number
Visit number
- subject_gender
Participant gender
- subject_race
Participant race
- study_full_name
Name of the study
- project_name
Name of project
Value
A multiAssay Experiment object
Examples
1
momspiMA <- momspiMultiAssay()
dozmorovlab/HMP2Data documentation built on June 5, 2019, 5:12 p.m.
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Description Usage Format Value Examples
Description
Construct MultiAssayExperiment for MOMS-PI 16S rRNA and cytokines data.
Usage
1 |
Format
A MultiAssayExperiment object with a 16S rRNA matrix and Cytokine matrix
16S
A counts matrix for the 16S rRNA-seq results.
cytokines
A counts matrix for the cytokines results.
colData
- file_id
File identifier
- md5
md5 hash for the file
- size
file size
- urls
URL for the file
- sample_id
Sample identifier
- file_name
Filename which the sample was taken from
- subject_id
Participant identifier
- sample_body_site
Body site of the sample
- visit_number
Visit number
- subject_gender
Participant gender
- subject_race
Participant race
- study_full_name
Name of the study
- project_name
Name of project
Value
A multiAssay Experiment object
Examples
1 | momspiMA <- momspiMultiAssay()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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