rao_chr20_25_rep: Contact matrix from Rao 2014, chromosome 20, 25kb resolution

Description Usage Format Value Source

Description

A sparse 3-column contact matrix

Usage

1

Format

A data.frame with 3 columns and 2125980 rows:

V1

The genomic loci corresponding to a given row of the contact matrix

V2

The genomic loci corresponding to a given column of the contact matrix

V3

Number of contacts between Loci1 and Loci2

Value

A data.frame

Source

Data from Rao SS, Huntley MH, Durand NC, Stamenova EK et al. A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell 2014 Dec 18;159(7):1665-80. PMID: 25497547. Available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525


dozmorovlab/SpectralTAD documentation built on Aug. 9, 2020, 5:59 a.m.