Man pages for dozmorovlab/preciseTAD
preciseTAD: A machine learning framework for precise TAD boundary prediction
| arrowhead_gm12878_5kb | Domain data from ARROWHEAD TAD-caller for GM12878 at 5 kb |
| bedToGRangesList | Function to create a GRangesList object from functional... |
| binary_func | Helper function used to create binary overlap type feature... |
| count_func | Helper function used to create count overlap type feature... |
| createTADdata | Function to create a data matrix used for building a... |
| distance_func | Helper function used to create (log2) distance type feature... |
| extractBoundaries | Function to extract boundaries from domain data. |
| juicer_func | Helper function for transforming a GRanges object into matrix... |
| percent_func | Helper function used to create percent overlap type feature... |
| preciseTAD | Precise TAD boundary prediction at base-level resolution... |
| signal_func | Helper function used to create signal type feature space |
| TADrandomForest | A wrapper function passed to 'caret::train' to apply a random... |
| TADrfe | A wrapper function passed to 'caret::rfe' to apply recursive... |
| tfbsList | A list of the chromosomal coordinates for 26 transcription... |
