tfbsList: A list of the chromosomal coordinates for 26 transcription...
In dozmorovlab/preciseTAD: preciseTAD: A machine learning framework for precise TAD boundary prediction
tfbsList R Documentation
A list of the chromosomal coordinates for 26 transcription factor binding
sites from the Gm12878 cell line
Description
A GRangesList containing 26 GRanges objects each with the following elements
- seqnames
The chromosome number
- ranges
IRanges object with start and end coordinates for each TFBS
- strand
empty column
- coverage
a metadata column with peak strength values at each site
Usage
tfbsList
Format
An object of class CompressedGRangesList of length 26.
Value
A GrangeList
Source
Data obtained from ENCODE.
ENCODE integrative analysis (PMID: 22955616; PMCID: PMC3439153)
ENCODE portal (PMID: 29126249; PMCID: PMC5753278)
Available at
https://www.encodeproject.org/
dozmorovlab/preciseTAD documentation built on April 26, 2022, 9:42 a.m.
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| tfbsList | R Documentation |
A list of the chromosomal coordinates for 26 transcription factor binding sites from the Gm12878 cell line
Description
A GRangesList containing 26 GRanges objects each with the following elements
- seqnames
The chromosome number
- ranges
IRanges object with start and end coordinates for each TFBS
- strand
empty column
- coverage
a metadata column with peak strength values at each site
Usage
tfbsList
Format
An object of class CompressedGRangesList of length 26.
Value
A GrangeList
Source
Data obtained from ENCODE. ENCODE integrative analysis (PMID: 22955616; PMCID: PMC3439153) ENCODE portal (PMID: 29126249; PMCID: PMC5753278) Available at https://www.encodeproject.org/
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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