Plot AA data by mean

1 2 | ```
AAplotByMean(AAdat, SampleIndices, clrs = 1, pchs = 3, MeanSubset = NA,
useMat = "log", cex = 0.5, ...)
``` |

`AAdat` |
An Autoantigen Array object |

`SampleIndices` |
The indices of the samples to be selected. |

`clrs` |
colors for the samples. If length 1 then they are all that color |

`pchs` |
point type for the samples. If length 1 then they are all that point type |

`MeanSubset` |
subset index of samples by which to order the means of the features |

`useMat` |
which data matrix to use for the data points. Currently, "log", "raw", and "resid" are available |

`cex` |
the size of the plotted points |

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