extract_ranked: Extract candidate compounds
In dpritchLibre/PepSAVIms: PepSAVI-MS Data Analysis

Description Usage Arguments

Extract an ordered list of candidate compounds from a rankEN object. The list is presented in the form of a data.frame, such that each row provides the identifying information for a particular candidate compound, and with the rows arranged in the order that the compounds entered the elastic net model (i.e. row 1 is the earliest, row 2 the 2nd earliest, etc.). The columns of the data.frame provide the mass-to-charge information, charge information, and possibly the correlation between the compound and the within-fraction average of the bioactivity replicates in the region of interest.

1	extract_ranked(rankEN_obj, include_cor = TRUE)

`rankEN_obj`	An object of class `rankEN`.
`include_cor`	Either `TRUE` or `FALSE`, specifying whether a column should be included in the returning `data.frame` providing the correlation between the compound and the within-fraction average of the bioactivity replicates in the region of interest.