history.md

In dpritchard/dgmisc: Miscellaneous R functions for research

Development History

This file documents additional information not yet ported to, nor ever very likely to be ported to, the main R documentation.

Package changes

v. 1.3-4

• pfs_tools: Tools for reading and parsing MIKE by DHI PFS files (specifically *.ecolab files)

v. 1.3-3

• Addition of bb_read function to the bb tool set.

• Addition of pim_parse and pim_sum functions to pim tool set.

• pim_parse now returns a classed variable (parsed.pim)

• pim_sum now expectes a classed variable

• pim_sum now warns if you try to process more than 1 site

• The PIM and BB tools are now feature-complete. Test for bugs.

v. 1.3-2

• Addition of mtexti function and beginning of DG collaboration.

v. 1.3-1

• Significant changes to plotting of ecofind objects

• To accomodate plotting changes we now:

  • Find and report change points

  • Return veg and dist in the ecofind object

v. 1.3

• Added ecofind and associated methods

• We now depend (again) on vegan

v. 1.2

• Added error_bar

v. 1.1

• Start incrementing and reporting version numbers

• Removed functional response code (now part of frair)

Specific function history

bb_read.R

v. 1.0 2013-07-03, GB and DP

    Initial development.

bb_parse.R

v. 1.0  2013-01-06, DP and GB

        Initial development.

v. 1.1  2013-01-14, DP

        Major refactoring for package.  Name change from parse.bb.ca.

v. 1.2  2013-03-13, GB

        Updated the column name for 'Date' (closes issue #2).

bb_plot_ca.R

v. 1.0  2012-12-30, GB and DP 

        Initial coding and development.

v. 1.1  2013-01-06, DP

        Refactoring for external parsing function.

v. 1.2  2013-01-10, GB

        Added disturbance as an input so as has timepoints with mine water discharge or undermining could be highlighted in plot.

v. 1.3  2013-01-14, DP

        Significant refactoring for inclusion in package.  Name change from plot.bb.ca.

v. 1.4  2013-03-13, GB (also DP)

        Fixed x-axis labelling issue (closes issue #1)

bb_plot_spp_rich.R

v. 1.0  2013-01-03, GB

        Initial development.

v. 1.1  2013-01-14, DP

        Major refactoring for package.  

        Code cleanup. Name change from plot.bb.spp.rich

        Proportional width of PNG based on number of sampling units.

pim_read.R

v. 1.0  2013-02-07, GB and DP

        PIMs analysis workflow.

        Starting point: field data sheet.

        End point: data in long format.

v. 1.1  2013-02-27, GB

        Modifications to the output file (order of columns).

        Adding three new columns: Year, Season, Method Code 

        to the alldata and allmeta data output files.

v. 1.2  2013-03-07 GB

        7/03/13

        Corrected the output: Species/steps now match with strata/condition!

        Minor change: CJ no longer wants season or year, so have removed!

v. 1.3  2013-07-05 GB

        Have put season and year back in!!

        Changed the date column name to YYYY/MM/DD

pim_parse.R

v. 1.0  2013-07-05, GB and DP

        Initial development. 

pim_sum.R

v. 1.0  2013-07-05, GB and DP

        takes a dataframe in the form output from the pim_parse function 

        outputs a dataframe summarising the pim data by sampling unit (species frequencies and mean condition).

dpritchard/dgmisc documentation built on May 15, 2019, 1:50 p.m.