frair-deprecated: Deprecated Functional Response Models
In dpritchard/frair: Tools for Functional Response Analysis

Description Usage Arguments Details Author(s)

A list of deprecated (i.e. no longer in use) functions / models.

    bdII(...)
    bdII_fit(...)
    bdII_nll(...)
    bdII_diff(...)
    bdII_nll_diff(...)
    real77r(...)
    real77r_fit(...)
    real77r_nll(...)
    real77r_diff(...)
    real77r_nll_diff(...)
    real77(...)
    real77_fit(...)
    real77_nll(...)
    real77_diff(...)
    real77_nll_diff(...)
    hassIIIr(...)
    hassIIIr_fit(...)
    hassIIIr_nll(...)
    hassIIIr_diff(...)
    hassIIIr_nll_diff(...)

...

Items to pass through a deprecated function

bdII, bdII_fit and bdII_nll were deprecated and removed from FRAIR in version 0.5. Although internally consistent, this code did not actually model the Beddington-DeAngelis type-II curve, as advertised. This code used in these functions was renamed emdII. A correct implementation of the Beddington-DeAngelis type-II curve (assuming replacement) will be added at some point in the future.

The real77* family were deprecated and removed from FRAIR in version 0.5. These functions were poorly specified, with unhelpful (that is to say: incorrect) definitions of the exponent term (q). More sensible flexible exponent model specifications (flexp and flexpnr) have been added as a replacement.

The hassIIIr model was renamed to hassIIInr in version 0.5. The previous name was confusing. The new name better reflects that it is a 'non-replacement' model.

Daniel Pritchard

dpritchard/frair documentation built on May 15, 2019, 1:50 p.m.