get_genes: Extract genes list from each gene clusters.
In dputhier/dbfmcl: The scigenex package (Single-Cell Informative GENe Explorer)

get_genes

R Documentation

Extract genes list from each gene clusters.

Description

Extract genes list from each gene clusters. Can extract genes from all clusters (default) or from specified clusters.

Usage

get_genes(object, cluster = "all", top = FALSE)

Arguments

`object`	A `ClusterSet` object.
`cluster`	A vector of gene cluster identity (all by default).
`top`	A logical to indicate whether to provide top genes.

Value

A character vector.

Examples

load_example_dataset('7871581/files/pbmc3k_medium_clusters')
# Get all selected genes
x <- get_genes(pbmc3k_medium_clusters)

# Get genes from gene cluster 1
x<- get_genes(pbmc3k_medium_clusters, cluster = 1)

# Get top 5 genes from cluster 1
pbmc3k_medium_clusters <- top_genes(pbmc3k_medium_clusters, top = 5)
x <- get_genes(pbmc3k_medium_clusters, cluster = 1, top = TRUE)

dputhier/dbfmcl documentation built on May 31, 2024, 8:57 a.m.