refSeqSearch: Get various gene annotation of NCBI RefSeq from GGRNA

In dritoshi/genesearchr: Fast full-text and DNA search in NCBI RefSeq, UniProt-KB and genome sequence

Description

This function queries various information of RefSeq from GGRNA.

Usage

  refSeqSearch(query, species)

Arguments

query	keyword or phrase (vector)
species	Human: "hs", Mouse: "Mm", Rat: "Rn" and so on.

Details

Search operators: See http://ggrna.dbcls.jp/en/help.html

Species:

• Human: "hs"

• Mouse: "mm"

• Rat: "rn"

• Chicken: "gg"

• Frog: "xt"

• Zebrafish: "dr"

• Sea squirt: "ci"

• Fly: "dm"

• Worm: "ce"

• Arabidopsis: "at"

• Rice: "os"

• S. cerevisiae: "sc"

• S. pombe: "sp"

Value

A data frame

Examples

my.hs.gene <- refSeqSearch(query = "NM_001518", species = "hs")
my.mm.gene <- refSeqSearch(query = "homeobox",  species = "mm")
# my.dm.gene <- refSeqSearch(query = "RNA interference", species = "dm")

dritoshi/genesearchr documentation built on May 15, 2019, 2:12 p.m.