list_illumina_manifest_files: List the available Illumina manifest files.

Description Usage Arguments Value Author(s) References See Also Examples

Description

Note, you must have an internet connection for this to work.

Usage

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Arguments

all

logical: if TRUE, then report all current and archived manifest names; default=FALSE, where only the current manifest names are reported

verbose

logical: if TRUE prints info when downloading the HTML pages from Illumina.

Value

a character vector of manifest names

Author(s)

Mark Cowley, 2012-10-14

References

[1] http://www.switchtoi.com/annotationfiles.ilmn
[2] http://www.switchtoi.com/annotationprevfiles.ilmn

See Also

download_illumina_manifest_file

Examples

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## Not run: 
#
# output as of 2012-10-14
#
list_illumina_manifest_files()
#  [1] "HumanHT-12_V4_0_R2_15002873_B_WGDASL"
#  [2] "HumanHT-12_V4_0_R2_15002873_B"
#  [3] "HumanHT-12_V4_0_R1_15002873_B"
#  [4] "HumanHT-12_V3_0_R2_11283641_A"
#  [5] "HumanHT-12_V3_0_R3_11283641_A"
#  [6] "HumanRef-8_V2_0_R4_11223162_A"
#  [7] "HUMANREF-8_V3_0_R1_11282963_A_WGDASL"
#  [8] "HumanRef-8_V3_0_R2_11282963_A"
#  [9] "HumanRef-8_V3_0_R3_11282963_A"
# [10] "HumanWG-6_V2_0_R4_11223189_A"
# [11] "HumanWG-6_V3_0_R2_11282955_A"
# [12] "HumanWG-6_V3_0_R3_11282955_A"
# [13] "MouseRef-8_V1_1_R4_11234312_A"
# [14] "MouseRef-8_V2_0_R2_11278551_A"
# [15] "MouseRef-8_V2_0_R3_11278551_A"
# [16] "MouseWG-6_V1_1_R4_11234304_A"
# [17] "MouseWG-6_V2_0_R2_11278593_A"
# [18] "MouseWG-6_V2_0_R3_11278593_A"
# [19] "RatRef-12_V1_0_R5_11222119_A"
# [20] "HumanMI_V1_R2_XS0000122-MAP"
# [21] "HumanMI_V2_R0_XS0000124-MAP"
# [22] "MouseMI_V1_R2_XS0000127-MAP"
# [23] "MouseMI_V2_R0_XS0000129-MAP"

list_illumina_manifest_files(all=TRUE)
# another 20 arrays

## End(Not run)

drmjc/lumidat documentation built on May 15, 2019, 2:23 p.m.