Module_1: Perform AVARDA Module 1 Analysis - Accounting for peptide -...
In drmonaco/AVARDA: AntiViral Antibody Response Deconvolution Algorithm (AVARDA), a multi-module software package for analyzing VirScan datasets
Description
Usage
Arguments
Value
Description
Perform AVARDA Module 1 Analysis - Accounting for peptide - virus xreactivity
Usage
1
Module_1(case_data, blast, total_prob, threshold = 5)
Arguments
case_data
A data.frame
blast
A data.frame
total_prob
A data.frame
threshold
A number
Value
Returns a three element. Element 1 is matrix of all peptide enriched above threshold in case_data showing all alignments defined in blast, thresholded by a predetermined value. Element 2 shows a list of viruses from blast with potential reactivity. Element 3 is similar to element 1 but not thresholded.
drmonaco/AVARDA documentation built on Dec. 20, 2021, 1:18 a.m.
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Description Usage Arguments Value
Description
Perform AVARDA Module 1 Analysis - Accounting for peptide - virus xreactivity
Usage
1 | Module_1(case_data, blast, total_prob, threshold = 5)
|
Arguments
case_data |
A data.frame |
blast |
A data.frame |
total_prob |
A data.frame |
threshold |
A number |
Value
Returns a three element. Element 1 is matrix of all peptide enriched above threshold in case_data showing all alignments defined in blast, thresholded by a predetermined value. Element 2 shows a list of viruses from blast with potential reactivity. Element 3 is similar to element 1 but not thresholded.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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