API for drramki-chop/edm
Scalable workflow to identify copy Number variants from exome sequencing data
| Global functions | |
|---|---|
| AddAnnotations,ExomeDepth-method | Man page |
| AnnotateExtra | Man page |
| AnnotateExtra,ExomeDepth-method | Man page |
| AnnotateExtra-methods | Man page |
| CallCNVs | Man page |
| CallCNVs,ExomeDepth-method | Man page |
| Conrad.hg19.common.CNVs | Man page |
| ExomeCount | Man page |
| ExomeDepth | Man page |
| ExomeDepth-class | Man page |
| ExomeDepth-package | Man page |
| TestCNV | Man page |
| TestCNV,ExomeDepth-method | Man page |
| call.variants | Source code |
| check.exons.def | Source code |
| check.yaml | Source code |
| count.everted.reads | Man page |
| countBam.everted | Man page |
| countBamInGRanges.exomeDepth | Man page |
| exons.hg19 | Man page |
| exons.hg19.X | Man page |
| gather.mosdepth.coverage | Source code |
| gather.variant.calls | Source code |
| genes.hg19 | Man page |
| get.bam.counts.mosdepth | Source code |
| get.power.betabinom | Man page |
| getBamCounts | Man page |
| initialize,ExomeDepth-method | Man page |
| initialize-methods | Man page |
| plot,ANY-method | Man page |
| plot,ExomeDepth,ANY-method | Man page |
| plot,ExomeDepth-method | Man page |
| plot-methods | Man page |
| plot.ExomeDepth | Man page |
| plot.sample.max.correlation | Source code |
| qbetabinom | Man page |
| qbetabinom.ab | Man page |
| select.exons | Source code |
| select.reference.panel | Source code |
| select.reference.set | Man page |
| show,ExomeDepth-method | Man page |
| show-methods | Man page |
| somatic.CNV.call | Man page |
| variant.annotations | Source code |
| viterbi.hmm | Man page |
| wrapper.script | Source code |
