Files in drramki-chop/edm
Scalable workflow to identify copy Number variants from exome sequencing data
DESCRIPTION
NAMESPACE
R/call.variants.R
R/check.exons.def.R
R/check.yaml.R
R/gather.mosdepth.coverage.R
R/gather.variant.calls.R
R/get.bam.counts.mosdepth.R
R/plot.sample.max.correlation.R
R/select.exons.R
R/select.reference.panel.R
R/variant.annotations.R
R/wrapper.script.R
README.md
_config.yml
data/clingenHI_110718.rds
data/clingenTS_110718.rds
data/clinvar_110718.rds
data/entrezIDs_gr.rds
data/exonCounts_by_gene.rds
data/exons.hg19.annotations.rds
data/exons.hg19.bed
data/geneSymbols_gr.rds
data/pli_omim_rvis.rds
data/pseudoautosomal.hg19.rds
exec/mosdepth
inst/template/lsf_template
inst/template/pbs_template
inst/template/sge_template
inst/template/slurm_template
inst/template/torque_template
man/AnnotateExtra-methods.Rd
man/AnnotateExtra.Rd
man/CallCNVs.Rd
man/Conrad.hg19.common.CNVs.Rd
man/ExomeCount.Rd
man/ExomeDepth-class.Rd
man/ExomeDepth-package.Rd
man/TestCNV.Rd
man/count.everted.reads.Rd
man/countBam.everted.Rd
man/countBamInGRanges.exomeDepth.Rd
man/exons.hg19.Rd
man/exons.hg19.X.Rd
man/genes.hg19.Rd
man/get.power.betabinom.Rd
man/getBamCounts.Rd
man/initialize-methods.Rd
man/plot.ExomeDepth.Rd
man/qbetabinom.Rd
man/qbetabinom.ab.Rd
man/select.reference.set.Rd
man/show-methods.Rd
man/somatic.CNV.call.Rd
man/viterbi.hmm.Rd
scripts/reproducibility.with.precomputed.controls.and.ed.model.R
scripts/run.single.sample.R
vignettes/.install_extras
vignettes/ExomeDepth-vignette.Rnw
