refit.det: Refit detectability raster layers function

In dsouthwell/TestPackagev2: Spatially explicit power analysis in dynamic landscapes

Description

This function is called only if a stochastic disturbance is modelled at sites. It re-fits the detectability raster layers for disturbance sensitive species given simulated disturbance events and the disturbance history A new raster stack is returned for each detection method

Usage

refit.det(det.method1.new, det.method2.new, det.method3.new, det.method4.new,
  layers, time.fire, fire.freq, jj, dist.occ.time, dist.occ.freq, n.species)

Arguments

det.method1.new	An array of detectability estimates for each species at sites over time using method 1.
det.method2.new	An array of detectability estimates for each species at sites over time using method 2.
det.method3.new	An array of detectability estimates for each species at sites over time using method 3.
det.method4.new	An array of detectability estimates for each species at sites over time using method 4.
layers	An array of covararites at each site used to update the detectability arrays given the simulated disturbances
time.fire	A vector specifying the time since a disturbance at each site in year jj given the simulated disturbances
fire.freq	A vector specifying the number of disturbances at sites during a 15 year moving window
jj	The year of the monitoring program
dist.occ.time	An integer indentifying which layer in the covariate raster stack is the time since the last disturbance layer
dist.occ.freq	An integer indentifying which layer in the covariate raster stack is the disturbance frequency layer
n.species	Number of species included in power simulations

dsouthwell/TestPackagev2 documentation built on May 28, 2019, 9:38 a.m.