DNAm: Partial results of a differential methylation test.
In dswatson/smoothFDR: An empirical Bayes method for exploiting spatial structure in large multiple-testing problems
Description
Usage
Format
Source
Description
Output from a limma analysis comparing DNA methylation status between 4
healthy and 4 cancerous samples. Data are from an Illumina 450k chip and
distributed with the ChAMP package. Output only includes CpGs from
chromosome 13. See epigen.R for complete preprocessing pipeline.
Usage
1
Format
A data frame with 10286 rows and 6 columns:
- cpg
CpG island id.
- pos
Genomic location.
- chr
Chromosome.
- z
z-statistic from differential methylation test.
- p.value
Corresponding p-value.
- BH_q.value
Corresponding Benjamini-Hochberg q-value.
Source
https://bioconductor.org/packages/release/bioc/html/ChAMP.html
dswatson/smoothFDR documentation built on March 4, 2020, 3:36 a.m.
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Description Usage Format Source
Description
Output from a limma analysis comparing DNA methylation status between 4
healthy and 4 cancerous samples. Data are from an Illumina 450k chip and
distributed with the ChAMP package. Output only includes CpGs from
chromosome 13. See epigen.R for complete preprocessing pipeline.
Usage
1 |
Format
A data frame with 10286 rows and 6 columns:
- cpg
CpG island id.
- pos
Genomic location.
- chr
Chromosome.
- z
z-statistic from differential methylation test.
- p.value
Corresponding p-value.
- BH_q.value
Corresponding Benjamini-Hochberg q-value.
Source
https://bioconductor.org/packages/release/bioc/html/ChAMP.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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