correlationFinder: correlationFinder
In dtenenba/AdvancedR_stage3: Yeast Correlation Finder

Finds yeast genes with correlated expression.

1 2	correlationFinder(dataFile, cor.threshold=0.85)

`dataFile`	The name of a data file to open. This should be a tab-delimited text file consisting of conditions as the columns and genes as the rows.
`cor.threshold`	The threshold at which to calculate the correlation matrix.

Calculates the upper triangular correlation matrix from mRNA expression data; identifies genes whose expression is highly correlated.

A named list, in which the names are genes, and the values are the genes highly correlated to each of them.

Paul Shannon

  correlated.list <- correlationFinder(system.file("extdata",
    "sub_combined_complete_dataset_526G_198E.txt",
    package="YeastmRNACor"))

dtenenba/AdvancedR_stage3 documentation built on May 15, 2019, 4:53 p.m.

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