Description Usage Arguments Details Value Author(s) Examples
Finds yeast genes with correlated expression.
1 2 | correlationFinder(dataFile, cor.threshold=0.85)
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dataFile |
The name of a data file to open. This should be a tab-delimited text file consisting of conditions as the columns and genes as the rows. |
cor.threshold |
The threshold at which to calculate the correlation matrix. |
Calculates the upper triangular correlation matrix from mRNA expression data; identifies genes whose expression is highly correlated.
A named list, in which the names are genes, and the values are the genes highly correlated to each of them.
Paul Shannon
1 2 3 4 | correlated.list <- correlationFinder(system.file("extdata",
"sub_combined_complete_dataset_526G_198E.txt",
package="YeastmRNACor"))
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