In dtenenba/RGalaxy-vignette-changes: Make an R function available in the Galaxy web platform

````r options(width = 75) options(useFancyQuotes=FALSE)

# A minimal R Markdown example

A quote:

> Markdown is not LaTeX.

To compile me, run this in R:

    library(knitr)
    knit('001-minimal.Rmd')
    cat('foo')
    cat("foo")

See [output here](https://github.com/yihui/knitr-examples/blob/master/001-minimal.md).

## code chunks

A _paragraph_ here. A code chunk below (remember the three backticks):

```r
1+1
.4-.7+.3 # what? it is not zero!

graphics

It is easy. I did not really show the plot here; if you want it, remove the option eval=FALSE from the chunk header below.

plot(1:10)
hist(rnorm(1000))

inline code

Yes I know the value of pi is r pi, and 2 times pi is r 2*pi.

math

Sigh. You cannot live without math equations. OK, here we go: $\alpha+\beta=\gamma$. Note this is not supported by native markdown. You probably want to try RStudio, or at least the R package markdown, or the function knitr::knit2html().

nested code chunks

You can write code within other elements, e.g. a list

1. foo is good r strsplit('hello indented world', ' ')[[1]]
2. bar is better

conclusion

Nothing fancy. You are ready to go. When you become picky, go to the knitr website.

dtenenba/RGalaxy-vignette-changes documentation built on May 15, 2019, 4:54 p.m.