duct317/scISR: Single-Cell Imputation using Subspace Regression

Provides an imputation pipeline for single-cell RNA sequencing data. The 'scISR' method uses a hypothesis-testing technique to identify zero-valued entries that are most likely affected by dropout events and estimates the dropout values using a subspace regression model (Tran et.al. (2022) <DOI:10.1038/s41598-022-06500-4>).

Getting started

Package details

MaintainerDuc Tran <duct@nevada.unr.edu>
LicenseLGPL
Version0.1.1
URL https://github.com/duct317/scISR
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("duct317/scISR")
duct317/scISR documentation built on July 7, 2022, 1:23 a.m.