phylomoments: phylomoments: Efficient computations of phylogenetic...
In dunleavy005/phylomoments: Efficient Computations of Phylogenetic Stochastic Mapping Moments
Description
Author(s)
References
Description
This package implements a simulation-free dynamic programming algorithm for
calculating higher-order moments of stochastic mapping summaries on a
phylogeny. Utility functions related to simulation-based stochastic mapping
and first-order moments are also provided.
Please see the vignettes for some examples of using the functions
provided in this package. They can be accessed using
browseVignettes("phylomoments").
Author(s)
Amrit Dhar, Vladimir N. Minin
Maintainer: Amrit Dhar adhar@uw.edu
References
Nielsen R (2002) “Mapping mutations on phylogenies”,
Systematic Biology, 51(5):729-739.
Minin VN and Suchard MA (2008) “Counting labeled transitions in
continuous-time Markov models of evolution”, Journal of Mathematical
Biology, 56(3):391-412.
Dhar A and Minin VN (2017) “Calculating Higher-Order Moments of
Phylogenetic Stochastic Mapping Summaries in Linear Time”, Journal of
Computational Biology, 24(5):377-399.
dunleavy005/phylomoments documentation built on May 15, 2019, 5:59 p.m.
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Description Author(s) References
Description
This package implements a simulation-free dynamic programming algorithm for calculating higher-order moments of stochastic mapping summaries on a phylogeny. Utility functions related to simulation-based stochastic mapping and first-order moments are also provided.
Please see the vignettes for some examples of using the functions
provided in this package. They can be accessed using
browseVignettes("phylomoments").
Author(s)
Amrit Dhar, Vladimir N. Minin
Maintainer: Amrit Dhar adhar@uw.edu
References
Nielsen R (2002) “Mapping mutations on phylogenies”, Systematic Biology, 51(5):729-739.
Minin VN and Suchard MA (2008) “Counting labeled transitions in continuous-time Markov models of evolution”, Journal of Mathematical Biology, 56(3):391-412.
Dhar A and Minin VN (2017) “Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time”, Journal of Computational Biology, 24(5):377-399.
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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