Description Author(s) References
This package implements a simulation-free dynamic programming algorithm for calculating higher-order moments of stochastic mapping summaries on a phylogeny. Utility functions related to simulation-based stochastic mapping and first-order moments are also provided.
Please see the vignettes for some examples of using the functions
provided in this package. They can be accessed using
browseVignettes("phylomoments")
.
Amrit Dhar, Vladimir N. Minin
Maintainer: Amrit Dhar adhar@uw.edu
Nielsen R (2002) “Mapping mutations on phylogenies”, Systematic Biology, 51(5):729-739.
Minin VN and Suchard MA (2008) “Counting labeled transitions in continuous-time Markov models of evolution”, Journal of Mathematical Biology, 56(3):391-412.
Dhar A and Minin VN (2017) “Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time”, Journal of Computational Biology, 24(5):377-399.
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