revdep/problems.md

In duthedd/ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics

Setup

Platform

|setting |value | |:--------|:----------------------------| |version |R version 3.3.1 (2016-06-21) | |system |x86_64, darwin13.4.0 | |ui |X11 | |language |(EN) | |collate |en_US.UTF-8 | |tz |America/Mexico_City | |date |2016-11-07 |

Packages

|package | |version |date |source | |:-------------|:--|:----------|:----------|:------------------------------| |covr | |2.2.1 |2016-08-10 |cran (@2.2.1) | |digest | |0.6.10 |2016-08-02 |cran (@0.6.10) | |ggplot2 | |2.1.0 |2016-03-01 |cran (@2.1.0) | |ggplot2movies | |0.0.1 |2015-08-25 |cran (@0.0.1) | |gtable | |0.2.0 |2016-02-26 |cran (@0.2.0) | |hexbin | |1.27.1 |2015-08-19 |cran (@1.27.1) | |Hmisc | |4.0-0 |2016-11-01 |cran (@4.0-0) | |knitr | |1.14.15 |2016-11-07 |Github (yihui/knitr@8cbc61a) | |lazyeval | |0.2.0 |2016-06-12 |cran (@0.2.0) | |mapproj | |1.2-4 |2015-08-03 |cran (@1.2-4) | |maps | |3.1.1 |2016-07-27 |cran (@3.1.1) | |maptools | |0.8-39 |2016-01-30 |cran (@0.8-39) | |multcomp | |1.4-6 |2016-07-14 |cran (@1.4-6) | |plyr | |1.8.4 |2016-06-08 |cran (@1.8.4) | |quantreg | |5.29 |2016-09-04 |cran (@5.29) | |reshape2 | |1.4.2 |2016-10-22 |cran (@1.4.2) | |rmarkdown | |1.1 |2016-10-16 |cran (@1.1) | |scales | |0.4.0.9003 |2016-10-25 |Github (hadley/scales@d58d83a) | |svglite | |1.2.0 |2016-11-04 |cran (@1.2.0) | |testthat | |1.0.2 |2016-04-23 |cran (@1.0.2) | |tibble | |1.2 |2016-08-26 |cran (@1.2) |

Check results

184 packages with problems

|package |version | errors| warnings| notes| |:----------------------|:-------------|------:|--------:|-----:| |aop |1.0.0 | 1| 0| 0| |archivist |2.1 | 1| 0| 2| |BACA |1.3 | 1| 0| 0| |BACCT |1.0 | 1| 0| 0| |backShift |0.1.3 | 1| 0| 0| |bamdit |3.0.0 | 1| 0| 0| |BCEA |2.2-3 | 1| 0| 1| |bcrm |0.4.6 | 1| 0| 1| |biogram |1.3 | 0| 1| 0| |BioPET |0.2.0 | 1| 0| 0| |BlandAltmanLeh |0.3.1 | 0| 1| 0| |brainGraph |0.72.0 | 1| 0| 0| |brms |1.1.0 | 1| 0| 0| |bsam |1.1.0 | 1| 0| 0| |BTSPAS |2014.0901 | 1| 0| 1| |cate |1.0.4 | 1| 0| 0| |choroplethr |3.5.2 | 0| 1| 0| |classify |1.3 | 1| 0| 0| |clifro |3.0-0 | 0| 1| 0| |clusterfly |0.4 | 1| 0| 0| |clustrd |1.0.2 | 1| 0| 0| |CollapsABEL |0.10.8 | 1| 0| 0| |coloc |2.3-1 | 0| 1| 2| |CopulaDTA |0.0.4 | 0| 1| 0| |corrr |0.2.1 | 1| 0| 0| |crmPack |0.2.0 | 1| 0| 0| |Crossover |0.1-16 | 1| 0| 0| |data.table |1.9.6 | 1| 0| 0| |ddpcr |1.5 | 0| 1| 0| |Deducer |0.7-9 | 1| 0| 0| |demi |1.1.2 | 1| 0| 0| |DiversityOccupancy |1.0.5 | 1| 0| 0| |DynNom |3.0.1 | 1| 0| 0| |dynr |0.1.7 | 1| 0| 0| |ecb |0.2 | 1| 1| 0| |eechidna |0.1 | 1| 0| 0| |emojifont |0.3.4 | 0| 1| 1| |factoextra |1.0.3 | 1| 0| 1| |Fgmutils |0.9.4 | 1| 0| 0| |fheatmap |1.0.1 | 1| 0| 1| |fitbitScraper |0.1.7 | 0| 1| 0| |funModeling |1.4 | 1| 0| 0| |fuzzyforest |1.0.2 | 1| 0| 0| |G2Sd |2.1.5 | 1| 0| 0| |gapfill |0.9.3 | 2| 0| 2| |GenCAT |1.0.3 | 1| 1| 3| |geomnet |0.1.2.1 | 1| 0| 0| |GGally |1.2.0 | 2| 0| 1| |ggalt |0.1.1 | 1| 0| 0| |ggenealogy |0.2.0 | 0| 1| 0| |ggExtra |0.5 | 1| 1| 0| |ggfortify |0.2.0 | 1| 0| 1| |ggnetwork |0.5.1 | 2| 1| 0| |ggpmisc |0.2.12 | 1| 1| 0| |ggpubr |0.1.0 | 1| 0| 0| |ggtern |2.1.4 | 1| 0| 0| |gitter |1.1.1 | 1| 0| 0| |glycanr |0.3.0 | 2| 0| 1| |Greg |1.2 | 2| 1| 0| |greport |0.7-1 | 1| 0| 0| |gridDebug |0.5-0 | 1| 0| 0| |hdnom |4.2 | 1| 1| 0| |heatmaply |0.6.0 | 1| 1| 0| |Hmisc |4.0-0 | 1| 0| 0| |HTSSIP |1.0.3 | 1| 0| 0| |hyperSpec |0.98-20150304 | 1| 1| 1| |IAPWS95 |1.0.0 | 1| 0| 0| |ibmdbR |1.48.0 | 1| 0| 0| |idm |1.7.1 | 1| 0| 0| |ie2miscdata |1.0.1 | 0| 1| 1| |imageData |0.1-26 | 1| 0| 0| |imager |0.31 | 0| 1| 1| |iNEXT |2.0.9 | 0| 1| 0| |InSilicoVA |1.1.2 | 1| 0| 0| |IntClust |0.0.2 | 1| 0| 0| |LANDD |1.1.0 | 1| 0| 0| |largeVis |0.1.9.1 | 0| 1| 0| |LDheatmap |0.99-2 | 1| 0| 0| |llama |0.9.1 | 1| 0| 0| |localgauss |0.35 | 1| 0| 0| |ltbayes |0.4 | 1| 0| 0| |magick |0.3 | 1| 0| 0| |manhattanly |0.1.0 | 0| 1| 0| |MEGENA |1.3.5-2 | 0| 1| 1| |MendelianRandomization |0.2.0 | 1| 0| 0| |MergeGUI |0.2-1 | 1| 0| 0| |MetaIntegrator |1.0.3 | 1| 0| 0| |metaMix |0.2 | 1| 0| 0| |MissingDataGUI |0.2-5 | 1| 0| 0| |MixSIAR |3.1.7 | 2| 0| 0| |mlr |2.9 | 2| 0| 2| |morse |2.2.0 | 1| 0| 0| |mrMLM |1.3 | 1| 0| 0| |mtconnectR |1.0.1 | 1| 0| 0| |multiDimBio |1.0.1 | 1| 0| 0| |mwaved |1.1.4 | 1| 0| 0| |myTAI |0.4.0 | 1| 0| 0| |NFP |0.99.1 | 1| 0| 0| |npregfast |1.3.0 | 1| 0| 0| |obAnalytics |0.1.0 | 1| 1| 0| |oddsratio |0.3.0 | 1| 1| 0| |onlineCPD |1.0 | 1| 0| 0| |OpenStreetMap |0.3.3 | 1| 0| 0| |openVA |1.0.1 | 1| 0| 0| |OriGen |1.4.3 | 1| 0| 0| |OutbreakTools |0.1-14 | 1| 1| 0| |pander |0.6.0 | 0| 1| 1| |ParamHelpers |1.9 | 1| 0| 0| |pcaPA |2.0.2 | 1| 0| 0| |pcrsim |1.0.1 | 1| 0| 0| |PGRdup |0.2.2.1 | 0| 1| 2| |photobiologyInOut |0.4.12 | 0| 1| 0| |photobiologyLamps |0.4.1 | 0| 1| 0| |photobiologyLEDs |0.4.2 | 0| 1| 0| |photobiologyPlants |0.4.0 | 0| 1| 0| |PKgraph |1.7 | 1| 0| 0| |PlasmaMutationDetector |1.5.2 | 1| 0| 0| |playwith |0.9-54 | 1| 0| 1| |plotluck |1.0.0 | 1| 1| 0| |plotly |4.5.2 | 2| 0| 0| |PortfolioEffectHFT |1.7 | 1| 0| 0| |prcbench |0.5.2 | 2| 1| 0| |PredictTestbench |1.1.1 | 0| 1| 0| |pRF |1.2 | 1| 0| 0| |proportion |1.2.3 | 0| 1| 1| |PSCBS |0.61.0 | 1| 0| 0| |qdap |2.2.5 | 1| 0| 0| |quanteda |0.9.8.5 | 1| 0| 0| |quickpsy |0.1.4 | 1| 0| 0| |radiant.model |0.6.0 | 1| 0| 0| |raptr |0.0.1 | 1| 0| 0| |ReporteRs |0.8.7 | 1| 0| 0| |rfordummies |0.1.2 | 1| 0| 1| |RJafroc |0.1.1 | 1| 0| 0| |rmcfs |1.1.2 | 1| 0| 0| |rms |5.0-0 | 1| 0| 0| |robCompositions |2.0.2 | 0| 1| 1| |RPPanalyzer |1.4.3 | 1| 0| 0| |rrepast |0.5.0 | 1| 0| 0| |RSA |0.9.10 | 0| 1| 0| |rstan |2.12.1 | 1| 0| 0| |rstanarm |2.12.1 | 1| 0| 1| |rsvg |1.0 | 1| 0| 0| |Rz |0.9-1 | 0| 1| 2| |scmamp |0.2.55 | 1| 0| 0| |SEERaBomb |2016.1 | 1| 0| 0| |seewave |2.0.5 | 1| 0| 0| |SensusR |2.0.0 | 1| 0| 0| |SeqFeatR |0.2.4 | 1| 0| 0| |simcausal |0.5.1 | 0| 1| 0| |simmer |3.5.0 | 0| 1| 0| |simmr |0.3 | 1| 0| 0| |sjPlot |2.1.1 | 1| 0| 0| |slim |0.1.0 | 0| 1| 1| |snpEnrichment |1.7.0 | 1| 0| 0| |soc.ca |0.7.3 | 1| 0| 0| |sparkTable |1.2.0 | 1| 0| 1| |spcosa |0.3-6 | 1| 0| 0| |specmine |1.0 | 1| 0| 0| |starmie |0.1.2 | 1| 0| 0| |StroupGLMM |0.1.0 | 1| 0| 0| |structSSI |1.1.1 | 1| 0| 0| |strvalidator |1.8.0 | 1| 0| 0| |subspaceMOA |0.5.1 | 1| 0| 0| |surveillance |1.12.1 | 0| 1| 2| |survminer |0.2.2 | 1| 2| 1| |survMisc |0.5.3 | 1| 0| 0| |tabplot |1.3 | 1| 1| 0| |TcGSA |0.10.1 | 1| 0| 0| |tcgsaseq |1.0.1 | 1| 0| 2| |TELP |1.0 | 1| 0| 0| |toaster |0.5.4 | 1| 0| 0| |trackeR |0.0.4 | 0| 1| 0| |UBL |0.0.5 | 1| 0| 0| |UpSetR |1.3.0 | 0| 1| 1| |userfriendlyscience |0.4-1 | 1| 0| 2| |UsingR |2.0-5 | 1| 0| 0| |vdmR |0.2.2 | 2| 1| 0| |vipor |0.4.4 | 0| 1| 0| |vmsbase |2.1.3 | 1| 0| 0| |x.ent |1.1.2 | 1| 0| 0| |XGR |1.0.4 | 1| 0| 0| |XLConnect |0.2-12 | 1| 0| 0| |xtractomatic |3.1.1 | 0| 1| 0|

aop (1.0.0)

Maintainer: Lyle D. Burgoon [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘graph’ ‘Rgraphviz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

archivist (2.1)

Maintainer: Przemyslaw Biecek [e-mail] Bug reports: https://github.com/pbiecek/archivist/issues

1 error | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘archivist-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: aread
> ### Title: Read Artifacts Given as md5hashes from the Repository
> ### Aliases: aread
> 
> ### ** Examples
> 
> # read the object from local directory
> setLocalRepo(system.file("graphGallery", package = "archivist"))
> pl <- aread("f05f0ed0662fe01850ec1b928830ef32")
> # plot it
> pl
Error: ScalesList was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘archivist.github’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘archivist.github’

BACA (1.3)

Maintainer: Vittorio Fortino [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘RDAVIDWebService’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

BACCT (1.0)

Maintainer: Hongtao Zhang [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘BACCT’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/BACCT.Rcheck/00install.out’ for details.

backShift (0.1.3)

Maintainer: Christina Heinze [e-mail] Bug reports: https://github.com/christinaheinze/backShift/issues

1 error | 0 warnings | 0 notes

checking whether package ‘backShift’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/backShift.Rcheck/00install.out’ for details.

bamdit (3.0.0)

Maintainer: Pablo Emilio Verde [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘bamdit’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/bamdit.Rcheck/00install.out’ for details.

BCEA (2.2-3)

Maintainer: Gianluca Baio [e-mail]

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘BCEA-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: evppi
> ### Title: Expected Value of Perfect Partial Information (EVPPI) for
> ###   selected parameters
> ### Aliases: evppi evppi.default
> ### Keywords: Health economic evaluation Expected value of partial
... 12 lines ...
> # 
> # Runs the health economic evaluation using BCEA
> m <- bcea(e,c,ref=2,interventions=treats)
> #
> # Computes the EVPPI for a bunch of parameters
> inp <- CreateInputs(vaccine)
Error in CreateInputs(vaccine) : 
  You need to install the package 'R2jags'. Please run in your R terminal:
 install.packages('R2jags')
Execution halted
** found \donttest examples: check also with --run-donttest

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’

bcrm (0.4.6)

Maintainer: Michael Sweeting [e-mail]

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘bcrm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: bcrm
> ### Title: Bayesian Continual Reassessment Method for Phase I
> ###   Dose-Escalation Trials
> ### Aliases: bcrm
> 
... 133 lines ...
> ## Using rjags (requires JAGS to be installed)
> TwoPLogistic.mean.bcrm<-bcrm(stop=list(nmax=18),data=data,sdose=sdose
+   ,dose=dose,ff="logit2",prior.alpha=list(4,mu,Sigma),target.tox=target.tox
+   ,constrain=FALSE,pointest="mean",method="rjags")
Error: .onLoad failed in loadNamespace() for 'rjags', details:
  call: dyn.load(file, DLLpath = DLLpath, ...)
  error: unable to load shared object '/Users/hadley/R-revdep/rjags/libs/rjags.so':
  dlopen(/Users/hadley/R-revdep/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
  Referenced from: /Users/hadley/R-revdep/rjags/libs/rjags.so
  Reason: image not found
Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘BRugs’

biogram (1.3)

Maintainer: Michal Burdukiewicz [e-mail] Bug reports: https://github.com/michbur/biogram/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: slam
Quitting from lines 15-40 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
formal argument "panel.grid.major" matched by multiple actual arguments
Execution halted

BioPET (0.2.0)

Maintainer: Jeremy Roth [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘BioPET-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: enrichment_analysis
> ### Title: Prognostic Enrichment with Real Data
> ### Aliases: enrichment_analysis
> 
> ### ** Examples
> 
> data(dcaData)
> 
> ## using a single biomarker in the dataset
> analysis.single.marker <- enrichment_analysis(Cancer ~ Marker1,
+ data=dcaData,
+ reduction.under.treatment=0.3,
+ cost.screening=100,
+ cost.keeping=1000)
Warning in mean.default(response) :
  argument is not numeric or logical: returning NA
Error: Unsupported use of matrix or array for column indexing
Execution halted

BlandAltmanLeh (0.3.1)

Maintainer: Bernhard Lehnert [e-mail]

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 171-174 (Intro.Rmd) 
Error: processing vignette 'Intro.Rmd' failed with diagnostics:
Don't know how to add o to a plot
Execution halted

brainGraph (0.72.0)

Maintainer: Christopher G. Watson [e-mail] Bug reports: https://groups.google.com/forum/?hl=en#!forum/brainGraph-help

1 error | 0 warnings | 0 notes

checking whether package ‘brainGraph’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/brainGraph.Rcheck/00install.out’ for details.

brms (1.1.0)

Maintainer: Paul-Christian Buerkner [e-mail] Bug reports: https://github.com/paul-buerkner/brms/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  23: FUN(X[[i]], ...)
  24: element_render(theme = theme, element = paste0("axis.title.", label, modify), label = labels[[label]][[i]], 
         expand_x = label == "y", expand_y = label == "x") at /Users/hadley/Documents/ggplot/ggplot2/R/layout.R:176
  25: calc_element(element, theme) at /Users/hadley/Documents/ggplot/ggplot2/R/theme-elements.r:149
  26: Reduce(combine_elements, parents, theme[[element]]) at /Users/hadley/Documents/ggplot/ggplot2/R/theme.r:538
  27: f(init, x[[i]])

  testthat results ================================================================
  OK: 857 SKIPPED: 1 FAILED: 1
  1. Error: plotting functions don't throw unexpected errors (@tests.plots.R#11) 

  Error: testthat unit tests failed
  Execution halted

bsam (1.1.0)

Maintainer: Ian Jonsen [e-mail] Bug reports: https://github.com/ianjonsen/bsam/issues

1 error | 0 warnings | 0 notes

checking whether package ‘bsam’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/bsam.Rcheck/00install.out’ for details.

BTSPAS (2014.0901)

Maintainer: Carl J Schwarz [e-mail]

1 error | 0 warnings | 1 note

checking whether package ‘BTSPAS’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/BTSPAS.Rcheck/00install.out’ for details.

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘BRugs’

cate (1.0.4)

Maintainer: Qingyuan Zhao [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘sva’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

choroplethr (3.5.2)

Maintainer: Ari Lamstein [e-mail] Bug reports: https://github.com/arilamstein/choroplethr/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...

        • KN = Know Nothing

        • AM = Anti-Masonic

        • N = Nullifier

... 8 lines ...

     Taken from <URL:
     http://en.wikipedia.org/wiki/List_of_United_States_presidential_election_results_by_state>
     3/20/2014.


Loading required package: lattice
Quitting from lines 33-61 (h-creating-your-own-maps.Rmd) 
Error: processing vignette 'h-creating-your-own-maps.Rmd' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted

classify (1.3)

Maintainer: Dr Chris Wheadon [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘classify’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/classify.Rcheck/00install.out’ for details.

clifro (3.0-0)

Maintainer: Blake Seers [e-mail] Bug reports: https://github.com/ropensci/clifro/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: ggplot2
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=Auckland&zoom=8&size=640x640&scale=2&maptype=hybrid&language=en-EN&sensor=false
Information from URL : http://maps.googleapis.com/maps/api/geocode/json?address=Auckland&sensor=false
Quitting from lines 136-154 (cfStation.Rmd) 
Error: processing vignette 'cfStation.Rmd' failed with diagnostics:
GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

clusterfly (0.4)

Maintainer: Hadley Wickham [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘rggobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

clustrd (1.0.2)

Maintainer: Angelos Markos [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘clustrd-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: cluspca
> ### Title: Joint dimension reduction and clustering of continuous data.
> ### Aliases: cluspca
> 
> ### ** Examples
> 
> data(macro)
> outRKM = cluspca(macro, 3, 2, method = "RKM", rotation = "varimax")
> plot(outRKM, cludesc = TRUE)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

CollapsABEL (0.10.8)

Maintainer: Kaiyin Zhong [e-mail] Bug reports: https://bitbucket.org/kindlychung/collapsabel2/issues

1 error | 0 warnings | 0 notes

checking whether package ‘CollapsABEL’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/CollapsABEL.Rcheck/00install.out’ for details.

coloc (2.3-1)

Maintainer: Chris Wallace [e-mail] Bug reports: https://github.com/chr1swallace/coloc/issues

0 errors | 1 warning | 2 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: colorspace
Loading required package: MASS
Loading required package: BMA
Loading required package: survival
Loading required package: leaps
Loading required package: robustbase

Attaching package: ‘robustbase’

The following object is masked from ‘package:survival’:

    heart

Loading required package: inline
Loading required package: rrcov
Scalable Robust Estimators with High Breakdown Point (version 1.4-3)


Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 7 
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘snpStats’

checking R code for possible problems ... NOTE
approx.bf.p: no visible global function definition for ‘qnorm’
coeff.plot: no visible global function definition for ‘polygon’
coeff.plot: no visible global function definition for ‘abline’
coeff.plot: no visible global function definition for ‘arrows’
coeff.plot: no visible global function definition for ‘points’
coeff.plot: no visible global function definition for ‘segments’
coloc.abf.snpStats: no visible global function definition for
  ‘single.snp.tests’
coloc.abf.snpStats: no visible global function definition for
... 43 lines ...
  cor glm impute.snps integrate lm object optimize pchisq pf points
  polygon prcomp qnorm segments single.snp.tests snp.imputation var
  vcov
Consider adding
  importFrom("graphics", "abline", "arrows", "axis", "box", "points",
             "polygon", "segments")
  importFrom("stats", "as.formula", "coef", "coefficients", "cor", "glm",
             "integrate", "lm", "optimize", "pchisq", "pf", "prcomp",
             "qnorm", "var", "vcov")
  importFrom("utils", "combn")
to your NAMESPACE file.

CopulaDTA (0.0.4)

Maintainer: Victoria N Nyaga [e-mail]

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 291-292 (CopulaDTA_Vignette.Rmd) 
Error: processing vignette 'CopulaDTA_Vignette.Rmd' failed with diagnostics:
index out of bounds ('unit' subsetting)
Execution halted

corrr (0.2.1)

Maintainer: Simon Jackson [e-mail] Bug reports: https://github.com/drsimonj/corrr/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘corrr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: network_plot
> ### Title: Network plot of a correlation data frame
> ### Aliases: network_plot
> 
> ### ** Examples
> 
> x <- correlate(mtcars)
> network_plot(x)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

crmPack (0.2.0)

Maintainer: Daniel Sabanes Bove [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘crmPack’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/crmPack.Rcheck/00install.out’ for details.

Crossover (0.1-16)

Maintainer: Kornelius Rohmeyer [e-mail] Bug reports: https://github.com/kornl/Crossover/issues

1 error | 0 warnings | 0 notes

checking whether package ‘Crossover’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/Crossover.Rcheck/00install.out’ for details.

data.table (1.9.6)

Maintainer: Matt Dowle [e-mail] Bug reports: https://github.com/Rdatatable/data.table/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/tests.R’ failed.
Last 13 lines of output:
  Test 167.2 ran without errors but failed check that x equals y:
  > x = names(print(ggplot(DT) + geom_hex(aes(b, f)) + facet_wrap(~grp))) 
  [1] "data"   "layout" "plot"  
  > y = c("data", "panel", "plot") 
  [1] "data"  "panel" "plot" 
  Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
  Don't know how to automatically pick scale for object of type ITime. Defaulting to continuous.
  Tests 1441-1444 not run. If required install the 'fr_FR.utf8' locale.

  Error in eval(expr, envir, enclos) : 
    2 errors out of 4428 (lastID=1557.4, endian=little, sizeof(long double)==16) in inst/tests/tests.Rraw on Mon Nov  7 11:51:45 2016. Search tests.Rraw for test numbers: 167, 167.2.
  Calls: test.data.table -> sys.source -> eval -> eval
  Execution halted

ddpcr (1.5)

Maintainer: Dean Attali [e-mail] Bug reports: https://github.com/daattali/ddpcr/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
)
Parsed with column specification:
cols(
  `Assay1 Amplitude` = col_double(),
  `Assay2 Amplitude` = col_double(),
  Cluster = col_integer()
)
... 8 lines ...
cols(
  `Assay1 Amplitude` = col_double(),
  `Assay2 Amplitude` = col_double(),
  Cluster = col_integer()
)
DONE (0 seconds)
Initializing plate of type `custom_thresholds`... DONE (0 seconds)
Quitting from lines 442-443 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
Aesthetics must be either length 1 or the same as the data (4): x, y, size, hjust, vjust, fontface
Execution halted

Deducer (0.7-9)

Maintainer: Ian Fellows [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘Deducer’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/Deducer.Rcheck/00install.out’ for details.

demi (1.1.2)

Maintainer: Sten Ilmjarv [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘affxparser’ ‘affy’ ‘oligo’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

DiversityOccupancy (1.0.5)

Maintainer: Derek Corcoran [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘DiversityOccupancy’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/DiversityOccupancy.Rcheck/00install.out’ for details.

DynNom (3.0.1)

Maintainer: Amirhossein Jalali [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘DynNom’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/DynNom.Rcheck/00install.out’ for details.

dynr (0.1.7)

Maintainer: Lu Ou [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘dynr’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/dynr.Rcheck/00install.out’ for details.

ecb (0.2)

Maintainer: Eric Persson [e-mail]

1 error | 1 warning | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  5: check_status(req)
  6: stop("HTTP failure: ", req$status_code, "\n", httr::content(req, "text"))

  testthat results ================================================================
  OK: 2 SKIPPED: 0 FAILED: 5
  1. Error: get_dimensions returns a list of data frames (@tests.R#16) 
  2. Failure: malformed series key returns 404 error (@tests.R#25) 
  3. Failure: malformed series key returns 404 error (@tests.R#26) 
  4. Failure: malformed series key returns 404 error (@tests.R#27) 
  5. Error: get_description returns a character vector (@tests.R#32) 

  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 114-116 (ecb_sdw.Rmd) 
Error: processing vignette 'ecb_sdw.Rmd' failed with diagnostics:
HTTP failure: 500
<HTML><HEAD>
<TITLE>Internal Server Error</TITLE>
</HEAD><BODY>
<H1>Internal Server Error - Read</H1>
The server encountered an internal error or misconfiguration and was unable to
complete your request.<P>
Reference&#32;&#35;3&#46;f0fd717&#46;1478542055&#46;756990
</BODY></HTML>
Execution halted

eechidna (0.1)

Maintainer: Ben Marwick [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘eechidna-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hexDat
> ### Title: Electorate hexagon data in a tidy form
> ### Aliases: hexDat
> ### Keywords: datasets
> 
... 18 lines ...

    layout

> p <- ggplot(hexDat, aes(xcent, ycent, text = Electorate)) + 
+   geom_hex(stat = "identity") + 
+   lims(x=c(-80, 8), y=c(-40, 50))
> ggplotly(p, tooltip = "text")
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

emojifont (0.3.4)

Maintainer: Guangchuang Yu [e-mail] Bug reports: https://github.com/GuangchuangYu/emojifont/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 119-144 (emojifont.Rmd) 
Error: processing vignette 'emojifont.Rmd' failed with diagnostics:
there is no package called 'ggtree'
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘ggtree’

factoextra (1.0.3)

Maintainer: Alboukadel Kassambara [e-mail] Bug reports: https://github.com/kassambara/factoextra/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘factoextra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fviz_ca
> ### Title: Visualize Correspondence Analysis
> ### Aliases: fviz_ca fviz_ca_biplot fviz_ca_col fviz_ca_row
> 
> ### ** Examples
... 44 lines ...
> 
> # Change gradient color
> # Use repel = TRUE to avoid overplotting (slow if many points)
> fviz_ca_row(res.ca, col.row = "cos2", repel = TRUE) + 
+       scale_color_gradient2(low = "white", mid = "#2E9FDF", 
+       high = "#FC4E07", midpoint = 0.5, space = "Lab")+
+ theme_minimal()
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted
** found \donttest examples: check also with --run-donttest

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘NbClust’

Fgmutils (0.9.4)

Maintainer: Clayton Vieira Fraga Filho [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘Fgmutils’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/Fgmutils.Rcheck/00install.out’ for details.

fheatmap (1.0.1)

Maintainer: Sivasish [e-mail]

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘fheatmap-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name:  Column Annotations 
> ### Title: Annotations of columns in "fheatmap_data"
> ### Aliases: ' annotation_col '
> ### Keywords: annotation_col
> 
> ### ** Examples
> 
> data(annotation_col)
> fheatmap(fheatmap_data,annotation_col=annotation_col)
Error in theme(panel.grid.major = element_blank(), panel.grid.minor = element_blank(),  : 
  formal argument "plot.margin" matched by multiple actual arguments
Calls: fheatmap -> draw_tree -> theme_blank -> theme
Execution halted

checking R code for possible problems ... NOTE
theme_blank: possible error in theme(panel.grid.major =
  element_blank(), panel.grid.minor = element_blank(), panel.background
  = element_blank(), axis.line = element_blank(), axis.ticks =
  element_blank(), axis.text = element_blank(), panel.grid =
  element_blank(), panel.border = element_blank(), plot.margin =
  rep(unit(0, "null"), 4), panel.margin = unit(0, "null"), plot.margin
  = rep(unit(0, "null"), 4), legend.position = "none"): formal argument
  "plot.margin" matched by multiple actual arguments

fitbitScraper (0.1.7)

Maintainer: Cory Nissen [e-mail]

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 29-40 (fitbitScraper-examples.Rmd) 
Error: processing vignette 'fitbitScraper-examples.Rmd' failed with diagnostics:
Value for option cookie (10022) must be length-1 string
Execution halted

funModeling (1.4)

Maintainer: Pablo Casas [e-mail] Bug reports: https://github.com/pablo14/funModeling/issues

1 error | 0 warnings | 0 notes

checking whether package ‘funModeling’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/funModeling.Rcheck/00install.out’ for details.

fuzzyforest (1.0.2)

Maintainer: Daniel Conn [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘fuzzyforest-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ff
> ### Title: Fits fuzzy forest algorithm.
> ### Aliases: ff
> 
> ### ** Examples
... 9 lines ...
Attaching package: ‘fastcluster’

The following object is masked from ‘package:stats’:

    hclust

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : 
  there is no package called ‘GO.db’
Error: package or namespace load failed for ‘WGCNA’
Execution halted
** found \donttest examples: check also with --run-donttest

G2Sd (2.1.5)

Maintainer: Regis K. Gallon [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘G2Sd’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/G2Sd.Rcheck/00install.out’ for details.

gapfill (0.9.3)

Maintainer: Florian Gerber [e-mail]

2 errors | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘gapfill-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: Image
> ### Title: Image Panels
> ### Aliases: Image
> 
> ### ** Examples
> 
> Image(ndvi)
Error in theme(line = element_blank(), strip.background = element_rect(fill = "white",  : 
  formal argument "line" matched by multiple actual arguments
Calls: Image -> theme
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  4: theme(line = element_blank(), strip.background = element_rect(fill = "white", color = "white"), 
         strip.text.x = element_text(), strip.text.y = element_text(), axis.ticks = element_blank(), 
         axis.text.x = element_blank(), axis.text.y = element_blank(), axis.title.x = element_blank(), 
         axis.title.y = element_blank(), line = element_blank(), legend.position = "right", 
         panel.border = element_blank(), plot.margin = unit(c(1, 1, 1, 1), "mm"), panel.margin = unit(2, 
             "mm"))

  testthat results ================================================================
  OK: 859 SKIPPED: 0 FAILED: 1
  1. Error: Image (@test-Image.R#5) 

  Error: testthat unit tests failed
  Execution halted

checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘doMPI’

checking R code for possible problems ... NOTE
Image: possible error in theme(line = element_blank(), strip.background
  = element_rect(fill = "white", color = "white"), strip.text.x =
  element_text(), strip.text.y = element_text(), axis.ticks =
  element_blank(), axis.text.x = element_blank(), axis.text.y =
  element_blank(), axis.title.x = element_blank(), axis.title.y =
  element_blank(), line = element_blank(), legend.position = "right",
  panel.border = element_blank(), plot.margin = unit(c(1, 1, 1, 1),
  "mm"), panel.margin = unit(2, "mm")): formal argument "line" matched
  by multiple actual arguments

GenCAT (1.0.3)

Maintainer: Eric Reed [e-mail]

1 error | 1 warning | 3 notes

checking examples ... ERROR
Running examples in ‘GenCAT-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: GenCAT
> ### Title: Running GenCAT
> ### Aliases: GenCAT
> ### Keywords: ~kwd1 ~kwd2
> 
... 15 lines ...
            SNP effect_allele other_allele   testStat chr position class
17232 rs9572807             C            T -0.3014771  13 72423959 DACH1
24151 rs4389009             G            A -1.4443860  13 99193519 STK24
37178 rs7151730             T            A  0.1387317  14 33531585 NPAS3
58941 rs1076958             G            A  2.0597766  14 91131857 TTC7B
13089 rs7987481             G            A -1.0024210  13 47318950 LRCH1
58302  rs411064             G            A  0.2132412  14 90008860 FOXN3
> 
> library(snpStats)
Error in library(snpStats) : there is no package called ‘snpStats’
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: ggplot2
Quitting from lines 62-69 (GenCAT-vignette.Rmd) 
Error: processing vignette 'GenCAT-vignette.Rmd' failed with diagnostics:
unable to find required package 'snpStats'
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘snpStats’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘snpStats’

checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'snpStats'
  Calls: <Anonymous> ... .extendsForS3 -> extends -> getClassDef -> .requirePackage
  Execution halted

geomnet (0.1.2.1)

Maintainer: Samantha Tyner [e-mail] Bug reports: https://github.com/sctyner/geomnet/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘geomnet-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: football
> ### Title: College football games network (undirected)
> ### Aliases: football
> ### Keywords: datasets
> 
... 23 lines ...
+     layout = 'fruchtermanreingold'
+   ) +
+   theme_net() +
+   theme(legend.position = "bottom") +
+   scale_colour_brewer("Conference", palette = "Paired")  +
+   guides(linetype = FALSE)
Warning: Ignoring unknown aesthetics: label
Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : 
  object 'panel_scales' not found
Calls: <Anonymous> ... f -> <Anonymous> -> f -> <Anonymous> -> f -> ::: -> get
Execution halted

GGally (1.2.0)

Maintainer: Barret Schloerke [e-mail] Bug reports: https://github.com/ggobi/ggally/issues

2 errors | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘GGally-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: +.gg
> ### Title: Modify a ggmatrix object by adding an ggplot2 object to all
> ###   plots
> ### Aliases: +.gg
> 
> ### ** Examples
> 
> data(tips, package = "reshape")
> pm <- ggpairs(tips[, 2:3])
> ## change to black and white theme
> pm + ggplot2::theme_bw()
Warning: `panel.margin` is deprecated. Please use `panel.spacing` property instead
Error in FUN(X[[i]], ...) : 
  only defined on a data frame with all numeric variables
Calls: <Anonymous> ... [ -> [.gtable -> Summary.data.frame -> lapply -> FUN
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  1.  Failure: stops (@test-ggmatrix_getput.R#23) 
  2.  Failure: stops (@test-ggmatrix_getput.R#23) 
  3.  Failure: stops (@test-ggmatrix_getput.R#23) 
  4.  Failure: stops (@test-ggmatrix_getput.R#23) 
  5.  Failure: stops (@test-ggmatrix_getput.R#23) 
  6.  Failure: stops (@test-ggmatrix_getput.R#23) 
  7.  Error: order (@test-ggparcoord.R#222) 
  8.  Error: axisLabels (@test-zzz_ggpairs.R#350) 
  9.  Error: strips and axis (@test-zzz_ggpairs.R#373) 
  10. Error: subtypes (@test-zzz_ggpairs.R#614) 

  Error: testthat unit tests failed
  Execution halted

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

ggalt (0.1.1)

Maintainer: Bob Rudis [e-mail] Bug reports: https://github.com/hrbrmstr/ggalt/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘ggalt-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: coord_proj
> ### Title: Similar to 'coord_map' but uses the PROJ.4 library/package for
> ###   projection transformation
> ### Aliases: coord_proj
> 
... 7 lines ...
> 
> gg <- ggplot()
> gg <- gg + geom_map(data=world, map=world,
+                     aes(x=long, y=lat, map_id=region))
Warning: Ignoring unknown aesthetics: x, y
> gg <- gg + coord_proj("+proj=wintri")
> gg
Error in gPathFromVector(names) : 
  a 'grob' path must contain at least one 'grob' name
Calls: <Anonymous> ... valid.data -> recycle.data -> gPath -> gPathFromVector
Execution halted

ggenealogy (0.2.0)

Maintainer: Lindsay Rutter [e-mail]

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
  conversion failure on 'Barbara Choroś-Tomczyk' in 'mbcsToSbcs': dot substituted for <c5>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Barbara Choroś-Tomczyk' in 'mbcsToSbcs': dot substituted for <9b>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Ondřej Chochola' in 'mbcsToSbcs': dot substituted for <c5>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Ondřej Chochola' in 'mbcsToSbcs': dot substituted for <99>
... 8 lines ...
  conversion failure on 'Peter Čerňanský' in 'mbcsToSbcs': dot substituted for <8c>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Peter Čerňanský' in 'mbcsToSbcs': dot substituted for <c5>
Warning in graphics::strwidth(pMPDF$label, "inches") :
  conversion failure on 'Peter Čerňanský' in 'mbcsToSbcs': dot substituted for <88>

Error: processing vignette 'ggenealogy.Rnw' failed with diagnostics:
 chunk 57 (label = plotAnimate) 
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Execution halted

ggExtra (0.5)

Maintainer: Dean Attali [e-mail] Bug reports: https://github.com/daattali/ggExtra/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘ggExtra-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggMarginal
> ### Title: Add marginal density/histogram to ggplot2 scatterplots
> ### Aliases: ggMarginal
> 
> ### ** Examples
> 
> 
> # basic usage
> p <- ggplot2::ggplot(mtcars, ggplot2::aes(wt, mpg)) + ggplot2::geom_point()
> ggMarginal(p)
Warning in mean.default(getLimits(pbTop, "y")) :
  argument is not numeric or logical: returning NA
Error: Don't know how to add o to a plot
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 94-95 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
Don't know how to add o to a plot
Execution halted

ggfortify (0.2.0)

Maintainer: Masaaki Horikoshi [e-mail]

1 error | 0 warnings | 1 note

checking tests ... ERROR
Running the tests in ‘tests/test-all.R’ failed.
Last 13 lines of output:

  testthat results ================================================================
  OK: 1072 SKIPPED: 4 FAILED: 7
  1. Failure: fortify.bats works for austres (@test-forecast.R#96) 
  2. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#180) 
  3. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#181) 
  4. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#182) 
  5. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#189) 
  6. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#190) 
  7. Failure: autoplot ts works for multivariate timeseries (@test-ts.R#191) 

  Error: testthat unit tests failed
  Execution halted

checking installed package size ... NOTE
  installed size is  5.5Mb
  sub-directories of 1Mb or more:
    doc   4.9Mb

ggnetwork (0.5.1)

Maintainer: Francois Briatte [e-mail]

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘ggnetwork-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: geom_edgetext_repel
> ### Title: Draw repulsive edge labels.
> ### Aliases: geom_edgelabel_repel geom_edgetext_repel
> 
> ### ** Examples
... 41 lines ...
Loading required package: sna
Loading required package: statnet.common
sna: Tools for Social Network Analysis
Version 2.4 created on 2016-07-23.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
 For citation information, type citation("sna").
 Type help(package="sna") to get started.

Error: GeomLabelRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  7: fetch_ggproto(x, name) at /Users/hadley/Documents/ggplot/ggplot2/R/ggproto.r:135
  8: stop(class(x)[[1]], " was built with an incompatible version of ggproto.\n", "Please reinstall the package that provides this extension.", 
         call. = FALSE) at /Users/hadley/Documents/ggplot/ggplot2/R/ggproto.r:122

  testthat results ================================================================
  OK: 11 SKIPPED: 0 FAILED: 4
  1. Error: geom_nodetext_repel works (@test-geoms.R#34) 
  2. Error: geom_nodelabel_repel works (@test-geoms.R#58) 
  3. Error: geom_edgetext_repel works (@test-geoms.R#101) 
  4. Error: geom_edgelabel_repel works (@test-geoms.R#108) 

  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
network: Classes for Relational Data
Version 1.13.0 created on 2015-08-31.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
                    Mark S. Handcock, University of California -- Los Angeles
                    David R. Hunter, Penn State University
                    Martina Morris, University of Washington
                    Skye Bender-deMoll, University of Washington
 For citation information, type citation("network").
 Type help("network-package") to get started.

Loading required package: statnet.common
sna: Tools for Social Network Analysis
Version 2.4 created on 2016-07-23.
copyright (c) 2005, Carter T. Butts, University of California-Irvine
 For citation information, type citation("sna").
 Type help(package="sna") to get started.

Quitting from lines 199-205 (ggnetwork.Rmd) 
Error: processing vignette 'ggnetwork.Rmd' failed with diagnostics:
GeomLabelRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ggpmisc (0.2.12)

Maintainer: Pedro J. Aphalo [e-mail] Bug reports: https://bitbucket.org/aphalo/ggpmisc/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘ggpmisc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: stat_dens2d_filter
> ### Title: Filter observations in high density regions.
> ### Aliases: stat_dens2d_filter stat_dens2d_filter_g
> 
> ### ** Examples
... 39 lines ...
> 
> ggplot(data = d, aes(x, y, label = lab, color = group)) +
+   geom_point() +
+   stat_dens2d_filter(geom = "text")
> 
> ggplot(data = d, aes(x, y, label = lab, color = group)) +
+   geom_point() +
+   stat_dens2d_filter(geom = "text_repel")
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 680-683 (user-guide.Rmd) 
Error: processing vignette 'user-guide.Rmd' failed with diagnostics:
GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ggpubr (0.1.0)

Maintainer: Alboukadel Kassambara [e-mail] Bug reports: https://github.com/kassambara/ggpubr/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘ggpubr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: diff_express
> ### Title: Differential gene expression analysis results
> ### Aliases: diff_express
> 
> ### ** Examples
... 6 lines ...
+    fdr = 0.05, fc = 2, size = 0.4,
+    palette = c("#B31B21", "#1465AC", "darkgray"),
+    genenames = as.vector(diff_express$name),
+    legend = "top", top = 20,
+    font.label = c("bold", 11),
+    font.legend = "bold",
+    font.main = "bold",
+    ggtheme = ggplot2::theme_minimal())
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

ggtern (2.1.4)

Maintainer: Nicholas Hamilton [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘ggtern’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/ggtern.Rcheck/00install.out’ for details.

gitter (1.1.1)

Maintainer: Omar Wagih [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘EBImage’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

glycanr (0.3.0)

Maintainer: Ivo Ugrina [e-mail] Bug reports: https://github.com/iugrina/glycanr/issues

2 errors | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘glycanr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: quantilenorm
> ### Title: Quantile Normalization of glycan data
> ### Aliases: quantilenorm
> 
> ### ** Examples
> 
> data(mpiu)
> mpiun <- quantilenorm(mpiu)
Error in quantilenorm(mpiu) : 
  Unable to proceed since package preprocessCore from
        BioConductor is not available on this system. This
        package is a prerequisite to use the quantilenorm function!
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:

  The following objects are masked from 'package:base':

      intersect, setdiff, setequal, union

  Error in quantilenorm(mpiu, transpose = TRUE) : 
    Unable to proceed since package preprocessCore from
          BioConductor is not available on this system. This
          package is a prerequisite to use the quantilenorm function!
  Calls: test_check ... force -> source_file -> eval -> eval -> quantilenorm
  testthat results ================================================================
  OK: 5 SKIPPED: 0 FAILED: 0
  Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘preprocessCore’

Greg (1.2)

Maintainer: Max Gordon [e-mail]

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘Greg-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: simpleRmsAnova
> ### Title: A simpler latex output of the latex.anova.rms
> ### Aliases: print.simpleRmsAnova simpleRmsAnova
> ### Keywords: internal
> 
> ### ** Examples
> 
> # ** Borrowed code from the lrm example **
> 
> #Fit a logistic model containing predictors age, blood.pressure, sex
> #and cholesterol, with age fitted with a smooth 5-knot restricted cubic 
> #spline function and a different shape of the age relationship for males 
> #and females.  
> 
> library(rms)
Loading required package: Hmisc
Loading required package: lattice
Error: package ‘survival’ 2.39.5 was found, but >= 2.40.1 is required by ‘Hmisc’
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  2: .getRequiredPackages2(pkgInfo, quietly = quietly)
  3: library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc, quietly = quietly)
  4: .getRequiredPackages2(pkgInfo, quietly = quietly)
  5: stop(gettextf(msg, sQuote(pkg), current, dep$op, target, sQuote(pkgname)), call. = FALSE, 
         domain = NA)

  Error: package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
  testthat results ================================================================
  OK: 12 SKIPPED: 0 FAILED: 1
  1. Error: That rms-functions work (@test-addNonlinearity.R#108) 

  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: forestplot
Loading required package: grid
Loading required package: magrittr
Loading required package: Gmisc
Loading required package: Rcpp
Loading required package: htmlTable
Loading required package: lattice
Quitting from lines 56-65 (Print_crude_and_adjusted_models.Rmd) 
Error: processing vignette 'Print_crude_and_adjusted_models.Rmd' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted

greport (0.7-1)

Maintainer: Frank E Harrell Jr [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘greport’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/greport.Rcheck/00install.out’ for details.

gridDebug (0.5-0)

Maintainer: Paul Murrell [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘graph’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

hdnom (4.2)

Maintainer: Nan Xiao [e-mail] Bug reports: https://github.com/road2stat/hdnom/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘hdnom-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hdcox.aenet
> ### Title: Adaptive Elastic-Net Model Selection for High-Dimensional Cox
> ###   Models
> ### Aliases: hdcox.aenet
> 
> ### ** Examples
> 
> library("survival")
> library("rms")
Loading required package: Hmisc
Loading required package: lattice
Error: package ‘survival’ 2.39.5 is loaded, but >= 2.40.1 is required by ‘Hmisc’
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 135-144 (hdnom.Rmd) 
Error: processing vignette 'hdnom.Rmd' failed with diagnostics:
package 'survival' 2.39.5 is loaded, but >= 2.40.1 is required by 'Hmisc'
Execution halted

heatmaply (0.6.0)

Maintainer: Tal Galili [e-mail] Bug reports: https://github.com/talgalili/heatmaply/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘heatmaply-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: heatmapr
> ### Title: Creates a heatmapr object
> ### Aliases: heatmapr
> 
> ### ** Examples
> 
> library(heatmaply)
> hm <- heatmapr(mtcars, scale = "column", colors = "Blues")
> heatmaply(hm)
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: heatmaply ... heatmaply.heatmapr -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:graphics':

    layout
... 8 lines ...

Suggestions and bug-reports can be submitted at: https://github.com/talgalili/heatmaply/issues
Or contact: <[e-mail]>

    To suppress this message use:  suppressPackageStartupMessages(library(heatmaply))
---------------------

Quitting from lines 83-85 (heatmaply.Rmd) 
Error: processing vignette 'heatmaply.Rmd' failed with diagnostics:
attempt to apply non-function
Execution halted

Hmisc (4.0-0)

Maintainer: Frank E Harrell Jr [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required and available but unsuitable version: ‘survival’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

HTSSIP (1.0.3)

Maintainer: Nicholas Youngblut [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘DESeq2’ ‘phyloseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

hyperSpec (0.98-20150304)

Maintainer: Claudia Beleites [e-mail]

1 error | 1 warning | 1 note

checking examples ... ERROR
Running examples in ‘hyperSpec-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: qplotspc
> ### Title: Spectra plotting with ggplot2
> ### Aliases: qplotspc
> 
> ### ** Examples
> 
> qplotspc (chondro)
Warning in qplotspc(chondro) :
  Number of spectra exceeds spc.nmax. Only the first 10 are plotted.
>   qplotspc (paracetamol, c (2800 ~ max, min ~ 1800)) + scale_x_reverse (breaks = seq (0, 3200, 400))
Error in gtable_add_grob(panel_table, strips$x$top, 2, panel_pos_col$l,  : 
  Not all inputs have either length 1 or same length same as 'grobs'
Calls: <Anonymous> ... <Anonymous> -> f -> <Anonymous> -> f -> gtable_add_grob
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in plotc(x, ...) : Intensity at first wavelengh only is used.
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'x' values are not equispaced; output may be wrong
Warning in hyperSpec:::.levelplot(x, data, ...) :
  Only first wavelength is used for plotting
Loading required package: latticeExtra
Loading required package: RColorBrewer
... 8 lines ...
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'x' values are not equispaced; output may be wrong
Warning in (function (x, y, z, subscripts, at = pretty(z), ..., col.regions = regions$col,  :
  'y' values are not equispaced; output may be wrong
Warning: Ignoring unknown aesthetics: y

Error: processing vignette 'plotting.Rnw' failed with diagnostics:
 chunk 77 (label = ggplot2-do) 
Error in gtable_add_grob(panel_table, strips$x$top, 2, panel_pos_col$l,  : 
  Not all inputs have either length 1 or same length same as 'grobs'
Execution halted

checking R code for possible problems ... NOTE
Warning: local assignments to syntactic functions: ~
Warning: local assignments to syntactic functions: ~
.cut.ticks: no visible global function definition for ‘head’
.jdx.TABULAR.PAC: no visible global function definition for ‘head’
.jdx.hdr.concentrations: no visible global function definition for
  ‘modifyList’
.jdx.readhdr: no visible global function definition for ‘maintainer’
.labels: no visible global function definition for ‘modifyList’
.levelplot: no visible global function definition for ‘modifyList’
... 56 lines ...
  ‘modifyList’
plot,hyperSpec-character: no visible global function definition for
  ‘modifyList’
Undefined global functions or variables:
  chull col2rgb colorRampPalette head maintainer modifyList read.table
  relist rgb str tail unstack write.table
Consider adding
  importFrom("grDevices", "chull", "col2rgb", "colorRampPalette", "rgb")
  importFrom("utils", "head", "maintainer", "modifyList", "read.table",
             "relist", "str", "tail", "unstack", "write.table")
to your NAMESPACE file.

IAPWS95 (1.0.0)

Maintainer: Benedito Baptista [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘IAPWS95’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/IAPWS95.Rcheck/00install.out’ for details.

ibmdbR (1.48.0)

Maintainer: Alexander Eckert [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘RODBC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

idm (1.7.1)

Maintainer: Angelos Markos [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘idm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: i_mca
> ### Title: Incremental Multiple Correspondence Analysis (MCA)
> ### Aliases: i_mca
> 
> ### ** Examples
> 
> ##Example 1 - Exact case
> data("women", package = "idm")
> nc = 5 # number of chunks
> res_iMCAh = i_mca(data1 = women[1:300,1:7], data2 = women[301:2107,1:7]
+ ,method = "exact", nchunk = nc)
> #static MCA plot of attributes on axes 2 and 3
> plot(x = res_iMCAh, dim = c(2,3), what = c(FALSE,TRUE), animation = FALSE)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted
** found \donttest examples: check also with --run-donttest

ie2miscdata (1.0.1)

Maintainer: Irucka Embry [e-mail] Bug reports: https://github.com/iembry-USGS/ie2miscdata/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Error in (function (package, help, pos = 2, lib.loc = NULL, character.only = FALSE,  : 
  there is no package called 'states2k'
Quitting from lines 24-109 (US-Engineering-Weather-Map.Rmd) 
Error: processing vignette 'US-Engineering-Weather-Map.Rmd' failed with diagnostics:
object 'states2k_map' not found
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘states2k’

imageData (0.1-26)

Maintainer: Chris Brien [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘imageData’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/imageData.Rcheck/00install.out’ for details.

imager (0.31)

Maintainer: Simon Barthelme [e-mail] Bug reports: https://github.com/dahtah/imager/issues

0 errors | 1 warning | 1 note

checking whether package ‘imager’ can be installed ... WARNING
Found the following significant warnings:
  ../inst/include/CImg.h:13559:29: warning: multiple unsequenced modifications to 'ptrs' [-Wunsequenced]
  ../inst/include/CImg.h:13738:19: warning: multiple unsequenced modifications to 'ptrs' [-Wunsequenced]
  ../inst/include/CImg.h:22316:23: warning: unsequenced modification and access to 'right' [-Wunsequenced]
  ../inst/include/CImg.h:29395:35: warning: unsequenced modification and access to '_n2x' [-Wunsequenced]
  ../inst/include/CImg.h:29395:35: warning: multiple unsequenced modifications to '_n3x' [-Wunsequenced]
  ../inst/include/CImg.h:29395:35: warning: unsequenced modification and access to '_n1x' [-Wunsequenced]
  ../inst/include/CImg.h:29415:40: warning: unsequenced modification and access to '_n2x' [-Wunsequenced]
  ../inst/include/CImg.h:29415:40: warning: multiple unsequenced modifications to '_n3x' [-Wunsequenced]
... 9 lines ...
  ../inst/include/CImg.h:29478:40: warning: unsequenced modification and access to '_n1x' [-Wunsequenced]
  ../inst/include/CImg.h:30531:19: warning: unsequenced modification and access to 'right' [-Wunsequenced]
  ../inst/include/CImg.h:31964:17: warning: multiple unsequenced modifications to '_n2x' [-Wunsequenced]
  ../inst/include/CImg.h:31964:17: warning: unsequenced modification and access to '_n1x' [-Wunsequenced]
  ../inst/include/CImg.h:44923:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:44931:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:44941:22: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:45125:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:45133:18: warning: unsequenced modification and access to 'err' [-Wunsequenced]
  ../inst/include/CImg.h:45142:20: warning: unsequenced modification and access to 'err' [-Wunsequenced]
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/imager.Rcheck/00install.out’ for details.

checking installed package size ... NOTE
  installed size is 11.1Mb
  sub-directories of 1Mb or more:
    data      1.4Mb
    doc       3.4Mb
    include   2.6Mb
    libs      2.5Mb

iNEXT (2.0.9)

Maintainer: T. C. Hsieh [e-mail] Bug reports: https://github.com/JohnsonHsieh/iNEXT/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 416-424 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
invalid line type
Execution halted

InSilicoVA (1.1.2)

Maintainer: Zehang Li [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘InSilicoVA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/InSilicoVA.Rcheck/00install.out’ for details.

IntClust (0.0.2)

Maintainer: Marijke Van Moerbeke [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘a4Core’ ‘limma’

Packages suggested but not available for checking:
  ‘MLP’ ‘biomaRt’ ‘org.Hs.eg.db’ ‘a4Base’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

LANDD (1.1.0)

Maintainer: Shangzhao Qiu [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘GOstats’ ‘GOSemSim’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

largeVis (0.1.9.1)

Maintainer: Amos Elberg [e-mail] Bug reports: https://github.com/elbamos/largeVis/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Quitting from lines 14-55 (benchmarks.Rmd) 
Error: processing vignette 'benchmarks.Rmd' failed with diagnostics:
formal argument "legend.key.size" matched by multiple actual arguments
Execution halted

LDheatmap (0.99-2)

Maintainer: Brad McNeney [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘chopsticks’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

llama (0.9.1)

Maintainer: Lars Kotthoff [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘llama’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/llama.Rcheck/00install.out’ for details.

localgauss (0.35)

Maintainer: Tore Selland Kleppe [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘localgauss’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/localgauss.Rcheck/00install.out’ for details.

ltbayes (0.4)

Maintainer: Timothy R. Johnson [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘ltbayes’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/ltbayes.Rcheck/00install.out’ for details.

magick (0.3)

Maintainer: Jeroen Ooms [e-mail] Bug reports: https://github.com/ropensci/magick/issues

1 error | 0 warnings | 0 notes

checking whether package ‘magick’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/magick.Rcheck/00install.out’ for details.

manhattanly (0.1.0)

Maintainer: Sahir Bhatnagar [e-mail] Bug reports: https://github.com/sahirbhatnagar/manhattanly/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in arrange_impl(.data, dots) :
  '.Random.seed' is not an integer vector but of type 'NULL', so ignored
Warning: 'scatter' objects don't have these attributes: 'evaluate'
Valid attributes include:
'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'hoverinfo', 'stream', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'mode', 'hoveron', 'line', 'connectgaps', 'fill', 'fillcolor', 'marker', 'textposition', 'textfont', 'r', 't', 'error_y', 'error_x', 'xaxis', 'yaxis', 'xsrc', 'ysrc', 'textsrc', 'textpositionsrc', 'rsrc', 'tsrc', 'key'

Warning: 'scatter' objects don't have these attributes: 'evaluate'
... 6 lines ...
'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'hoverinfo', 'stream', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'mode', 'hoveron', 'line', 'connectgaps', 'fill', 'fillcolor', 'marker', 'textposition', 'textfont', 'r', 't', 'error_y', 'error_x', 'xaxis', 'yaxis', 'xsrc', 'ysrc', 'textsrc', 'textpositionsrc', 'rsrc', 'tsrc', 'key'

Warning: 'scatter' objects don't have these attributes: 'evaluate'
Valid attributes include:
'type', 'visible', 'showlegend', 'legendgroup', 'opacity', 'name', 'uid', 'hoverinfo', 'stream', 'x', 'x0', 'dx', 'y', 'y0', 'dy', 'text', 'mode', 'hoveron', 'line', 'connectgaps', 'fill', 'fillcolor', 'marker', 'textposition', 'textfont', 'r', 't', 'error_y', 'error_x', 'xaxis', 'yaxis', 'xsrc', 'ysrc', 'textsrc', 'textpositionsrc', 'rsrc', 'tsrc', 'key'

Warning: Ignoring unknown aesthetics: text
Quitting from lines 104-105 (manhattanly.Rmd) 
Error: processing vignette 'manhattanly.Rmd' failed with diagnostics:
attempt to apply non-function
Execution halted

MEGENA (1.3.5-2)

Maintainer: Won-Min Song [e-mail]

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...

The following object is masked from 'package:base':

    union

Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
... 8 lines ...
  number of items to replace is not a multiple of replacement length
Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
Warning in vattrs[[name]][index] <- value :
  number of items to replace is not a multiple of replacement length
Quitting from lines 119-127 (MEGENA_pipeline_10062016.Rmd) 
Error: processing vignette 'MEGENA_pipeline_10062016.Rmd' failed with diagnostics:
formal argument "panel.background" matched by multiple actual arguments
Execution halted

checking R code for possible problems ... NOTE
plot_module: possible error in theme(panel.background =
  element_blank(), axis.title.x = element_blank(), axis.title.y =
  element_blank(), panel.background = element_rect(fill = "white",
  colour = NA), axis.line = element_blank(), axis.ticks =
  element_blank(), axis.text = element_blank(), panel.grid.minor =
  element_blank(), panel.grid.major = element_blank(), plot.title =
  element_text(size = title.size), legend.position = "bottom",
  legend.direction = "horizontal"): formal argument "panel.background"
  matched by multiple actual arguments
... 7 lines ...
  = "bottom", legend.direction = "horizontal"): formal argument
  "panel.background" matched by multiple actual arguments
plot_subgraph: possible error in theme(panel.background =
  element_blank(), axis.title.x = element_blank(), axis.title.y =
  element_blank(), panel.background = element_rect(fill = "white",
  colour = NA), axis.line = element_blank(), axis.ticks =
  element_blank(), axis.text = element_blank(), panel.grid.minor =
  element_blank(), panel.grid.major = element_blank(), plot.title =
  element_text(size = title.size), legend.position = "bottom",
  legend.direction = "horizontal"): formal argument "panel.background"
  matched by multiple actual arguments

MendelianRandomization (0.2.0)

Maintainer: Stephen Burgess [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘MendelianRandomization-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mr_plot
> ### Title: Draw a scatter plot of the genetic associations and/or causal
> ###   estimates
> ### Aliases: mr_plot mr_plot,MRAll-method mr_plot,MRInput-method
> 
> ### ** Examples
> 
> mr_plot(mr_input(bx = ldlc, bxse = ldlcse, by = chdlodds, byse = chdloddsse),
+   line="ivw")
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: mr_plot ... plotly_build.gg -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

MergeGUI (0.2-1)

Maintainer: Xiaoyue Cheng [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘MergeGUI’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/MergeGUI.Rcheck/00install.out’ for details.

MetaIntegrator (1.0.3)

Maintainer: Winston A. Haynes [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available:
  ‘multtest’ ‘preprocessCore’ ‘GEOquery’ ‘GEOmetadb’

Package suggested but not available for checking: ‘BiocStyle’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

metaMix (0.2)

Maintainer: Sofia Morfopoulou [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘Rmpi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

MissingDataGUI (0.2-5)

Maintainer: Xiaoyue Cheng [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘MissingDataGUI’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/MissingDataGUI.Rcheck/00install.out’ for details.

MixSIAR (3.1.7)

Maintainer: Brian Stock [e-mail] Bug reports: https://github.com/brianstock/MixSIAR/issues

2 errors | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘MixSIAR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mixsiar_gui
> ### Title: Run the GUI version of MixSIAR
> ### Aliases: mixsiar_gui
> 
> ### ** Examples
... 6 lines ...
Error in mixsiar_gui() : 
  *** gWidgetsRGtk2 package not able to be loaded. ***
        If 'library('gWidgetsRGtk2')' does not work, MixSIAR GUI will not run.
        On Windows/Linux, try 'install.packages('gWidgetsRGtk2')'.
        On Mac, close R, download and install GTK+ from:
        http://r.research.att.com/#other. Then install latest X11 application
        (xQuartz) from http://xquartz.macosforge.org/landing/.

        If installing GTK+ continues to be problematic, consider using the
        script version of MixSIAR. See manual for help and examples.
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  OK: 26 SKIPPED: 0 FAILED: 9
  1. Error: Wolves ex works (@test_ex1_wolves.R#33) 
  2. Error: Geese ex works (@test_ex2_geese.R#27) 
  3. Error: Lake ex works (@test_ex3_lake.R#27) 
  4. Error: Palmyra ex works (@test_ex4_palmyra.R#27) 
  5. Error: Killer whale ex works (@test_ex5_killerwhale.R#28) 
  6. Error: Snail ex works (@test_ex6_snail.R#27) 
  7. Error: Storm-petrel ex works (@test_ex7_stormpetrel.R#27) 
  8. Error: Cladocera ex works (@test_ex8_cladocera.R#31) 
  9. Error: Isopod ex works (@test_ex9_isopod.R#27) 

  Error: testthat unit tests failed
  Execution halted

mlr (2.9)

Maintainer: Bernd Bischl [e-mail] Bug reports: https://github.com/mlr-org/mlr/issues

2 errors | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘mlr-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotFilterValues
> ### Title: Plot filter values using ggplot2.
> ### Aliases: plotFilterValues
> 
> ### ** Examples
> 
> fv = generateFilterValuesData(iris.task, method = "chi.squared")
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Error: .onLoad failed in loadNamespace() for 'RWekajars', details:
  call: .jinit()
  error: JNI_GetCreatedJavaVMs returned -1
Execution halted
** found \donttest examples: check also with --run-donttest

checking tests ... ERROR
Running the tests in ‘tests/run-base.R’ failed.
Last 13 lines of output:
  1. Error: NoFeaturesModel works with FilterWrapper (@test_base_NoFeaturesModel.R#30) 
  2. Error: clustering performance (@test_base_clustering.R#15) 
  3. Error: clustering performance with missing clusters (@test_base_clustering.R#27) 
  4. Error: clustering resample (@test_base_clustering.R#41) 
  5. Error: clustering benchmark (@test_base_clustering.R#52) 
  6. Error: clustering tune (@test_base_clustering.R#65) 
  7. Error: filterFeatures (@test_base_filterFeatures.R#9) 
  8. Error: plotFilterValues (@test_base_filterFeatures.R#53) 
  9. Error: args are passed down to filter methods (@test_base_filterFeatures.R#87) 
  1. ...

  Error: testthat unit tests failed
  Execution halted

checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘C50’ ‘GPfit’ ‘RRF’

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Missing or unexported object: ‘irace::removeCandidatesMetaData’

morse (2.2.0)

Maintainer: Philippe Veber [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘morse’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/morse.Rcheck/00install.out’ for details.

mrMLM (1.3)

Maintainer: Yuanming [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘mrMLM’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/mrMLM.Rcheck/00install.out’ for details.

mtconnectR (1.0.1)

Maintainer: Subramanyam Ravishankar [e-mail]

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Error: `mapped_plot` not equal to lazyLoadDBfetch(c(36596L, 320L), datafile, compressed, envhook).
  Component "layers": Component 1: Component 3: Component 2: Modes of target, current: function, environment
  Component "layers": Component 1: Component 3: Component 2: target, current do not match when deparsed
  Component "layers": Component 1: Component 7: Component 2: Modes of target, current: function, environment
  Component "layers": Component 1: Component 7: Component 2: target, current do not match when deparsed
  Component "layers": Component 1: Component 9: Component 2: Modes of target, current: function, environment
  Component "layers": Component 1: Component 9: Component 2: target, current do not match when deparsed
  Component "layers": Component 1: Component 12: Modes of target, current: function, environment
  Component "layers": Component 1: Component 12: target, current do not match when deparsed
  Component "layers": Component 2: Component 3: Component 2: Modes of target, current: fun
  testthat results ================================================================
  OK: 0 SKIPPED: 0 FAILED: 0
  Execution halted

multiDimBio (1.0.1)

Maintainer: Samuel V. Scarpino [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘pcaMethods’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

mwaved (1.1.4)

Maintainer: Justin Rory Wishart [e-mail] Bug reports: https://github.com/jrwishart/mwaved/issues

1 error | 0 warnings | 0 notes

checking whether package ‘mwaved’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/mwaved.Rcheck/00install.out’ for details.

myTAI (0.4.0)

Maintainer: Hajk-Georg Drost [e-mail] Bug reports: https://github.com/HajkD/myTAI/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘edgeR’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

NFP (0.99.1)

Maintainer: Yang Cao [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘graph’ ‘KEGGgraph’

Packages suggested but not available for checking:
  ‘BiocStyle’ ‘graphite’ ‘NFPdata’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

npregfast (1.3.0)

Maintainer: Marta Sestelo [e-mail] Bug reports: http://github.com/sestelo/npregfast/issues

1 error | 0 warnings | 0 notes

checking whether package ‘npregfast’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/npregfast.Rcheck/00install.out’ for details.

obAnalytics (0.1.0)

Maintainer: Philip Stubbings [e-mail] Bug reports: https://github.com/phil8192/ob-analytics/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘obAnalytics-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotVolumePercentiles
> ### Title: Visualise available limit order book liquidity through time.
> ### Aliases: plotVolumePercentiles
> 
> ### ** Examples
... 10 lines ...
    plotVolumePercentiles => time range = 7200 secs
    plotVolumePercentiles => aggregating to mins intervals
    plotVolumePercentiles => aggregation: 2015-05-01 02:29:00 : 2015-05-01 04:29:00 by = mins
Warning: Ignoring unknown aesthetics: ymax
Warning: Ignoring unknown aesthetics: ymax
Warning in rep(yes, length.out = length(ans)) :
  'x' is NULL so the result will be NULL
Error in ifelse(data$ymax == 0, data$ymin, data$ymax) : 
  replacement has length zero
Calls: <Anonymous> ... f -> <Anonymous> -> f -> <Anonymous> -> f -> ifelse
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 535-541 (guide.Rmd) 
Error: processing vignette 'guide.Rmd' failed with diagnostics:
replacement has length zero
Execution halted

oddsratio (0.3.0)

Maintainer: Patrick Schratz [e-mail] Bug reports: https://github.com/pat-s/oddsratio/issues

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘oddsratio-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.oddsratio.into.plot
> ### Title: Insert odds ratios of GAM(M)s into smoothing function
> ### Aliases: add.oddsratio.into.plot
> 
> ### ** Examples
... 36 lines ...
+                                  values = c(0.4, 0.6))
>                                   
> # add or.object2 into plot                                  
> add.oddsratio.into.plot(plot.object, or.object2, or.yloc = 2.1, values.yloc = 2,
+                         line.col = "green4", text.col = "black",
+                         rect.col = "green4", rect.alpha = 0.2,
+                         line.alpha = 1, line.type = "dashed",
+                         arrow.xloc.r = 0.01, arrow.xloc.l = -0.01,
+                         arrow.length = 0.01, rect = TRUE)          
Error: Aesthetics must be either length 1 or the same as the data (1): xmin, xmax, ymin, ymax, fill, alpha
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 130-139 (function.tutorial.Rmd) 
Error: processing vignette 'function.tutorial.Rmd' failed with diagnostics:
Aesthetics must be either length 1 or the same as the data (1): xmin, xmax, ymin, ymax, fill, alpha
Execution halted

onlineCPD (1.0)

Maintainer: Zachary Zanussi [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘onlineCPD-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: findCP
> ### Title: Wisely Pick Changepoints
> ### Aliases: findCP
> 
> ### ** Examples
> 
> ## Two changepoints within \code{buffer} points:
> set.seed(5)
> y <- c(rnorm(15,0.5,0.01),0.505,0.51,0.015,0.52,rnorm(15,0.6,0.05))
> res <- offlineCPD(y)
> plot(res,buffer=10)     ## Will replace the two changepoints
Error: Aesthetics must be either length 1 or the same as the data (1): x, y, xend, yend, alpha
Execution halted

OpenStreetMap (0.3.3)

Maintainer: Ian Fellows [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘OpenStreetMap’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/OpenStreetMap.Rcheck/00install.out’ for details.

openVA (1.0.1)

Maintainer: Zehang Li [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘openVA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/openVA.Rcheck/00install.out’ for details.

OriGen (1.4.3)

Maintainer: John Michael O. Ranola [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘OriGen’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/OriGen.Rcheck/00install.out’ for details.

OutbreakTools (0.1-14)

Maintainer: Thibaut Jombart [e-mail]

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘OutbreakTools-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ToyOutbreakRaw
> ### Title: Raw simulated outbreak dataset
> ### Aliases: ToyOutbreakRaw
> ### Keywords: dataset
> 
... 572 lines ...
> plot(get.contacts(x, from=2, to=2.1), main="Contact network - day 2",
+      displaylabels=TRUE)
> plot(get.contacts(x, from=3, to=3.1), main="Contact network - day 3",
+      displaylabels=TRUE)
> 
> ## Mapping the outbreak (by sex) ##
> plot(x,'geo',location=c('lon','lat'),zoom=13,colorBy='Sex')
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=51.516439,-0.171146&zoom=13&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false
Error: GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in .local(x, ...) :
  The following sequence IDs are not in the dataset: 311, 222
Warning in .local(x, ...) :
  The following sequence IDs are not in the dataset: 311, 222
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  replaced special characters in figure filename "figs/OutbreakTools-out.width==".8\\textwidth"" -> "figs/OutbreakTools-out.width___.8\\textwidth_"
Warning in (if (out_format(c("latex", "sweave", "listings"))) sanitize_fn else paste0)(path,  :
  dots in figure paths replaced with _ ("figs/OutbreakTools-out_width____8//textwidth_")
Warning: The shape palette can deal with a maximum of 6 discrete values because
more than 6 becomes difficult to discriminate; you have 11. Consider
specifying shapes manually if you must have them.
Warning: Removed 58 rows containing missing values (geom_point).
Warning: `show_guide` has been deprecated. Please use `show.legend` instead.
Warning: `show_guide` has been deprecated. Please use `show.legend` instead.
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=51.516439,-0.171146&zoom=14&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false
Quitting from lines 1022-1023 (OutbreakTools.Rnw) 
Error: processing vignette 'OutbreakTools.Rnw' failed with diagnostics:
GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

pander (0.6.0)

Maintainer: Gergely Daróczi [e-mail] Bug reports: https://github.com/rapporter/pander/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: Hmisc
Quitting from lines 13-18 (pander.Rmd) 
Error: processing vignette 'pander.Rmd' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted


checking dependencies in R code ... NOTE
Missing or unexported object: ‘rms::reVector’

ParamHelpers (1.9)

Maintainer: Bernd Bischl [e-mail] Bug reports: https://github.com/berndbischl/ParamHelpers/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  3. Failure: convertParamSetToIrace work with vecparam (@test_convertParamSetToIrace.R#85) 
  b$b not equal to c("v", "w").
  target is NULL, current is character


  testthat results ================================================================
  OK: 1003 SKIPPED: 0 FAILED: 3
  1. Error: convertParamSetToIrace (@test_convertParamSetToIrace.R#32) 
  2. Failure: convertParamSetToIrace uses correct boundaries (@test_convertParamSetToIrace.R#69) 
  3. Failure: convertParamSetToIrace work with vecparam (@test_convertParamSetToIrace.R#85) 

  Error: testthat unit tests failed
  Execution halted

pcaPA (2.0.2)

Maintainer: Carlos A. Arias [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘pcaPA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/pcaPA.Rcheck/00install.out’ for details.

pcrsim (1.0.1)

Maintainer: Oskar Hansson [e-mail] Bug reports: https://github.com/OskarHansson/pcrsim/issues

1 error | 0 warnings | 0 notes

checking whether package ‘pcrsim’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/pcrsim.Rcheck/00install.out’ for details.

PGRdup (0.2.2.1)

Maintainer: J. Aravind [e-mail]

0 errors | 1 warning | 2 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
ERROR: Duplicated records found in prim.key field
ERROR: NULL records found in prim.key field
OK: No duplicated records found in prim.key field
OK: No NULL records found in prim.key field
Fuzzy matching
Phonetic matching
Semantic matching
Fuzzy matching
Phonetic matching
Semantic matching
Quitting from lines 995-1061 (Introduction.Rmd) 
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
formal argument "axis.ticks.y" matched by multiple actual arguments
Execution halted


checking R code for possible problems ... NOTE
ViewProbDup: possible error in theme(panel.background =
  element_rect(fill = "transparent"), axis.title.x =
  element_text(colour = "black", margin = margin(20, 0, 20, 0)),
  axis.ticks.x = element_blank(), axis.text.x = element_blank(),
  axis.ticks.y = element_blank(), axis.line = element_line(colour =
  NA), axis.line.y = element_line(colour = "black"), axis.ticks.y =
  element_line(colour = "black"), axis.text.y = element_text(colour =
  "black"), axis.title.y = element_blank(), plot.margin = unit(c(0,
  0.5, 0.5, 0.5), "cm"), panel.grid = element_blank()): formal argument
  "axis.ticks.y" matched by multiple actual arguments

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘RecordLinkage’

photobiologyInOut (0.4.12)

Maintainer: Pedro J. Aphalo [e-mail] Bug reports: https://bitbucket.org/aphalo/photobiologyinout/

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Read 3 items
Read 16 items
Quitting from lines 180-181 (user-guide.Rnw) 
Error: processing vignette 'user-guide.Rnw' failed with diagnostics:
StatPeaks was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

photobiologyLamps (0.4.1)

Maintainer: Pedro J. Aphalo [e-mail] Bug reports: https://bitbucket.org/aphalo/photobiologylamps/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 41-43 (data-catalogue.Rmd) 
Error: processing vignette 'data-catalogue.Rmd' failed with diagnostics:
StatPeaks was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

photobiologyLEDs (0.4.2)

Maintainer: Pedro J. Aphalo [e-mail] Bug reports: https://bitbucket.org/aphalo/photobiologyleds/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 50-52 (data-catalogue.Rmd) 
Error: processing vignette 'data-catalogue.Rmd' failed with diagnostics:
StatPeaks was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

photobiologyPlants (0.4.0)

Maintainer: Pedro J. Aphalo [e-mail] Bug reports: https://bitbucket.org/aphalo/photobiologyplants

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 79-81 (dataplotsPlants.Rnw) 
Error: processing vignette 'dataplotsPlants.Rnw' failed with diagnostics:
StatColorGuide was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

PKgraph (1.7)

Maintainer: Xiaoyong Sun [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘rggobi’

Depends: includes the non-default packages:
  ‘RGtk2’ ‘gWidgetsRGtk2’ ‘cairoDevice’ ‘lattice’ ‘rggobi’ ‘ggplot2’
  ‘proto’
Adding so many packages to the search path is excessive and importing
selectively is preferable.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

PlasmaMutationDetector (1.5.2)

Maintainer: Yves Rozenholc [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘VariantAnnotation’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

playwith (0.9-54)

Maintainer: Felix Andrews [e-mail]

1 error | 0 warnings | 1 note

checking whether package ‘playwith’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/playwith.Rcheck/00install.out’ for details.

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘latticist’

plotluck (1.0.0)

Maintainer: Stefan Schroedl [e-mail] Bug reports: https://github.com/stefan-schroedl/plotluck/issues

1 error | 1 warning | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  Factor variable price has too many levels (11602), truncating to 30
  *** 2D box/violin plot ***
  Factor variable rating has too many levels (91), truncating to 30
  Error in match.arg(opts$geom, choices.geom) : 
    'arg' should be one of "spine", "heat", "auto"
  Calls: test_check ... print -> plotluck -> determine.plot.type.1 -> match.arg
  In addition: Warning message:
  'switch' is deprecated.
  Use 'strip.position' instead.
  See help("Deprecated") 
  testthat results ================================================================
  OK: 0 SKIPPED: 0 FAILED: 0
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 83-85 (plotluck.Rmd) 
Error: processing vignette 'plotluck.Rmd' failed with diagnostics:
'sum' not defined for ordered factors
Execution halted

plotly (4.5.2)

Maintainer: Carson Sievert [e-mail] Bug reports: https://github.com/ropensci/plotly/issues

2 errors | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘plotly-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: style
> ### Title: Modify trace(s)
> ### Aliases: style
> 
> ### ** Examples
> 
> 
> p <- qplot(data = mtcars, wt, mpg, geom = c("point", "smooth"))
> # keep the hover info for points, but remove it for the line/ribbon
> style(p, hoverinfo = "none", traces = c(2, 3))
Error in gg2list(p, width = width, height = height, tooltip = tooltip,  : 
  attempt to apply non-function
Calls: style ... plotly_build.gg -> ggplotly -> ggplotly.ggplot -> gg2list
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  1. Error: factor levels determine tick order (@test-cookbook-axes.R#28) 
  2. Error: ylim hides points (@test-cookbook-axes.R#36) 
  3. Error: scale_y(limits) hides points (@test-cookbook-axes.R#41) 
  4. Error: Using coord_cartesian zooms into the area (@test-cookbook-axes.R#49) 
  5. Error: A scatterplot with regular (linear) axis scaling (@test-cookbook-axes.R#64) 
  6. Error: log2 scaling of the y axis (with visually-equal spacing) (@test-cookbook-axes.R#71) 
  7. Error: log2 coordinate transformation with visually-diminishing spacing (@test-cookbook-axes.R#77) 
  8. Error: log2 transform with labels (@test-cookbook-axes.R#86) 
  9. Error: scale_y_log10 (@test-cookbook-axes.R#92) 
  1. ...

  Error: testthat unit tests failed
  Execution halted

PortfolioEffectHFT (1.7)

Maintainer: Andrey Kostin [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘PortfolioEffectHFT’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/PortfolioEffectHFT.Rcheck/00install.out’ for details.

prcbench (0.5.2)

Maintainer: Takaya Saito [e-mail] Bug reports: https://github.com/takayasaito/prcbench/issues

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘prcbench-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ToolAUCCalculator
> ### Title: R6 class of the AUCCalculator tool
> ### Aliases: ToolAUCCalculator
> ### Keywords: datasets
> 
> ### ** Examples
> 
> ## Initialization
> toolauccalc <- ToolAUCCalculator$new()
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Error in rJava::.jinit() : JNI_GetCreatedJavaVMs returned -1
Calls: <Anonymous> ... .get_java_obj -> withVisible -> _f -> <Anonymous> -> .External
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
  1. Error: run_benchmark (@test_main_benchmark.R#32) 
  2. Error: run_benchmark: testset (@test_main_benchmark.R#58) 
  3. Error: run_benchmark: toolset (@test_main_benchmark.R#84) 
  4. Error: run_benchmark: times (@test_main_benchmark.R#131) 
  5. Error: run_benchmark: unit (@test_main_benchmark.R#166) 
  6. Error: run_evalcurve (@test_main_evalcurves.R#6) 
  7. Error: run_evalcurve: testset (@test_main_evalcurves.R#19) 
  8. Error: run_evalcurve: toolset (@test_main_evalcurves.R#32) 
  9. Error: run_evalcurve testscores (@test_main_evalcurves.R#57) 
  1. ...

  Error: testthat unit tests failed
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Quitting from lines 65-70 (introduction.Rmd) 
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
JNI_GetCreatedJavaVMs returned -1
Execution halted

PredictTestbench (1.1.1)

Maintainer: Neeraj Bokde [e-mail] Bug reports: https://github.com/neerajdhanraj/PredictTestbench/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 43-46 (my-vignette.Rmd) 
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
argument "pred" is missing, with no default
Execution halted

pRF (1.2)

Maintainer: Ankur Chakravarthy [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘multtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

proportion (1.2.3)

Maintainer: Rajeswaran Viswanathan [e-mail] Bug reports: https://github.com/RajeswaranV/proportion/issues

0 errors | 1 warning | 1 note

checking sizes of PDF files under ‘inst/doc’ ... WARNING
  ‘gs+qpdf’ made some significant size reductions:
     compacted ‘proportion.pdf’ from 689Kb to 387Kb
  consider running tools::compactPDF(gs_quality = "ebook") on these files

checking Rd cross-references ... NOTE
Packages unavailable to check Rd xrefs: ‘PropCIs’, ‘BlakerCI’, ‘prevalence’

PSCBS (0.61.0)

Maintainer: Henrik Bengtsson [e-mail] Bug reports: https://github.com/HenrikBengtsson/PSCBS/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘DNAcopy’

Package suggested but not available for checking: ‘aroma.light’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

qdap (2.2.5)

Maintainer: Tyler Rinker [e-mail] Bug reports: http://github.com/trinker/qdap/issues

1 error | 0 warnings | 0 notes

checking whether package ‘qdap’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/qdap.Rcheck/00install.out’ for details.

quanteda (0.9.8.5)

Maintainer: Kenneth Benoit [e-mail] Bug reports: https://github.com/kbenoit/quanteda/issues

1 error | 0 warnings | 0 notes

checking tests ... ERROR
Running the tests in ‘tests/testthat.R’ failed.
Last 13 lines of output:
      as.dist, dist

  The following object is masked from 'package:base':

      as.matrix

  testthat results ================================================================
  OK: 240 SKIPPED: 1 FAILED: 2
  1. Failure: test plot.kwic facet order parameter (@testPlots.R#70) 
  2. Failure: test plot.kwic keeps order of keywords passed (@testPlots.R#81) 

  Error: testthat unit tests failed
  Execution halted

quickpsy (0.1.4)

Maintainer: Linares Daniel [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘quickpsy-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plotcurves
> ### Title: Plot the curves
> ### Aliases: plotcurves
> 
> ### ** Examples
> 
> library(MPDiR) # contains the Vernier data
> fit <- quickpsy(Vernier, Phaseshift, NumUpward, N,
+                 grouping = .(Direction, WaveForm, TempFreq), B = 5)
> plotcurves(fit)
Error: Aesthetics must be either length 1 or the same as the data (8): ymin, ymax, colour, x
Execution halted

radiant.model (0.6.0)

Maintainer: Vincent Nijs [e-mail] Bug reports: https://github.com/radiant-rstats/radiant.model/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘radiant.model-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.model.predict
> ### Title: Plot method for model.predict functions
> ### Aliases: plot.model.predict
> 
> ### ** Examples
> 
> regress("diamonds", "price", c("carat","clarity")) %>%
+   predict(pred_cmd = "carat = 1:10") %>%
+   plot(xvar = "carat")
> logistic("titanic", "survived", c("pclass","sex","age"), lev = "Yes") %>%
+   predict(pred_cmd="pclass=levels(pclass), sex=levels(sex), age=seq(0,100,20)") %>%
+   plot(xvar = "age", color = "sex", facet_col = "pclass")
Error in rep(yes, length.out = length(ans)) : 
  attempt to replicate an object of type 'closure'
Calls: %>% ... <Anonymous> -> plot -> plot.model.predict -> ifelse
Execution halted

raptr (0.0.1)

Maintainer: Jeffrey O Hanson [e-mail] Bug reports: https://github.com/jeffreyhanson/raptr/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘hypervolume’ ‘gdalUtils’

Packages suggested but not available for checking: ‘gurobi’ ‘rgurobi’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

ReporteRs (0.8.7)

Maintainer: David Gohel [e-mail] Bug reports: https://github.com/davidgohel/ReporteRs/issues

1 error | 0 warnings | 0 notes

checking whether package ‘ReporteRs’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/ReporteRs.Rcheck/00install.out’ for details.

rfordummies (0.1.2)

Maintainer: Andrie de Vries [e-mail] Bug reports: https://github.com/andrie/rfordummies/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘rfordummies-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: saveElements
> ### Title: Saves a copy of the periodic table of elements as excel or csv
> ###   file.
> ### Aliases: saveElements
> 
> ### ** Examples
> 
> saveElements(file.path(tempdir(), "elements.xlsx"))
Loading required namespace: XLConnect
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.
Failed with error:  ‘.onLoad failed in loadNamespace() for 'XLConnectJars', details:
  call: .jinit()
  error: JNI_GetCreatedJavaVMs returned -1
’
Error in saveElements(file.path(tempdir(), "elements.xlsx")) : 
  Unable to create excel file. Install the XLConnect package and try again.
Execution halted

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

RJafroc (0.1.1)

Maintainer: Xuetong Zhai [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘RJafroc’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/RJafroc.Rcheck/00install.out’ for details.

rmcfs (1.1.2)

Maintainer: Michal Draminski [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘rmcfs’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rmcfs.Rcheck/00install.out’ for details.

rms (5.0-0)

Maintainer: Frank E Harrell Jr [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required and available but unsuitable version: ‘survival’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

robCompositions (2.0.2)

Maintainer: Matthias Templ [e-mail]

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in warn_if_args_exist(list(...)) :
  Extra arguments: 'colour', 'alpha', 'shape' are being ignored.  If these are meant to be aesthetics, submit them using the 'mapping' variable within ggpairs with ggplot2::aes or ggplot2::aes_string.
Warning: `panel.margin` is deprecated. Please use `panel.spacing` property instead
Quitting from lines 905-906 (imputation.Rnw) 
Error: processing vignette 'imputation.Rnw' failed with diagnostics:
only defined on a data frame with all numeric variables
Execution halted


checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘StatDA’

RPPanalyzer (1.4.3)

Maintainer: Astrid Wachter [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘limma’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

rrepast (0.5.0)

Maintainer: Antonio Prestes Garcia [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘rrepast’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rrepast.Rcheck/00install.out’ for details.

RSA (0.9.10)

Maintainer: Felix Schönbrodt [e-mail]

0 errors | 1 warning | 0 notes

checking whether package ‘RSA’ can be installed ... WARNING
Found the following significant warnings:
  Warning: loading Rplot failed
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/RSA.Rcheck/00install.out’ for details.

rstan (2.12.1)

Maintainer: Ben Goodrich [e-mail] Bug reports: https://github.com/stan-dev/rstan/issues/

1 error | 0 warnings | 0 notes

checking whether package ‘rstan’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rstan.Rcheck/00install.out’ for details.

rstanarm (2.12.1)

Maintainer: Ben Goodrich [e-mail] Bug reports: https://github.com/stan-dev/rstanarm/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘rstanarm-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.stanreg
> ### Title: Plot method for stanreg objects
> ### Aliases: plot.stanreg
> 
> ### ** Examples
... 75 lines ...
> # Intervals and point estimates
> plot(fit) + 
+ ggplot2::ggtitle("Posterior medians \n with 80% and 95% credible intervals")
'pars' not specified. Showing first 10 parameters by default.
ci_level: 0.8 (80% intervals)
outer_level: 0.95 (95% intervals)
Error in if (e1$inherit.blank) return(e2) else return(e1) : 
  argument is of length zero
Calls: <Anonymous> ... FUN -> element_render -> calc_element -> Reduce -> f
Execution halted
** found \donttest examples: check also with --run-donttest

checking installed package size ... NOTE
  installed size is  8.7Mb
  sub-directories of 1Mb or more:
    doc    1.3Mb
    libs   6.6Mb

rsvg (1.0)

Maintainer: Jeroen Ooms [e-mail] Bug reports: https://github.com/jeroenooms/rsvg/issues

1 error | 0 warnings | 0 notes

checking whether package ‘rsvg’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/rsvg.Rcheck/00install.out’ for details.

Rz (0.9-1)

Maintainer: Masahiro Hayashi [e-mail]

0 errors | 1 warning | 2 notes

checking dependencies in R code ... WARNING
'library' or 'require' call to ‘vcd’ in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Packages in Depends field not imported from:
  ‘foreign’ ‘ggplot2’ ‘grid’ ‘psych’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported object imported by a ':::' call: ‘foreign:::adQuote’
  See the note in ?`:::` about the use of this operator.
  Including base/recommended package(s):
  ‘foreign’

checking S3 generic/method consistency ... NOTE
Found the following apparent S3 methods exported but not registered:
  summary.CrossTable
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.

checking R code for possible problems ... NOTE
calc.hist.breaks: no visible global function definition for
  ‘nclass.Sturges’
calc.hist.breaks: no visible global function definition for ‘nclass.FD’
calc.hist.breaks: no visible global function definition for
  ‘nclass.scott’
check.class: no visible global function definition for ‘as.formula’
gtkColorSelectionForPlotGetColor: no visible global function definition
  for ‘rgb’
gtkColorSelectionWidgetNew: no visible global function definition for
... 9 lines ...
write.spss: no visible global function definition for ‘write.table’
write.stata: no visible global function definition for ‘write.table’
Undefined global functions or variables:
  addmargins as.formula assocstats colors localeToCharset nclass.FD
  nclass.Sturges nclass.scott rgb theme_grey write.table
Consider adding
  importFrom("grDevices", "colors", "nclass.FD", "nclass.Sturges",
             "nclass.scott", "rgb")
  importFrom("stats", "addmargins", "as.formula")
  importFrom("utils", "localeToCharset", "write.table")
to your NAMESPACE file.

scmamp (0.2.55)

Maintainer: Borja Calvo [e-mail] Bug reports: https://github.com/b0rxa/scmamp/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘graph’ ‘Rgraphviz’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

SEERaBomb (2016.1)

Maintainer: Tomas Radivoyevitch [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘SEERaBomb’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/SEERaBomb.Rcheck/00install.out’ for details.

seewave (2.0.5)

Maintainer: Jerome Sueur [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘seewave’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/seewave.Rcheck/00install.out’ for details.

SensusR (2.0.0)

Maintainer: Matthew S. Gerber [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘SensusR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.LocationDatum
> ### Title: Plot location data.
> ### Aliases: plot.LocationDatum
> 
> ### ** Examples
... 188 lines ...
[1] "57% done merging data for WlanDatum (4 of 7)."
[1] "71% done merging data for WlanDatum (5 of 7)."
[1] "85% done merging data for WlanDatum (6 of 7)."
[1] "100% done merging data for WlanDatum (7 of 7)."
[1] "Creating data frame for WlanDatum."
> plot(data$LocationDatum)
Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=38.0676352725243,-78.9510441850485&zoom=10&size=640x640&scale=2&maptype=terrain&language=en-EN&sensor=false
Information from URL : http://maps.googleapis.com/maps/api/geocode/json?address=38.0676352725243,-78.9510441850485&sensor=false
Error: GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

SeqFeatR (0.2.4)

Maintainer: Bettina Budeus [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘qvalue’ ‘widgetTools’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

simcausal (0.5.1)

Maintainer: Oleg Sofrygin [e-mail] Bug reports: https://github.com/osofr/simcausal/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
node W1, order:1
node W2, order:2
node W3, order:3
...automatically assigning order attribute to some nodes...
node W1, order:1
node W2, order:2
...automatically assigning order attribute to some nodes...
... 8 lines ...
Attaching package: 'ggplot2'

The following object is masked _by_ '.GlobalEnv':

    %+%

Loading required package: lattice
Quitting from lines 2415-2446 (simcausal_vignette.Rnw) 
Error: processing vignette 'simcausal_vignette.Rnw' failed with diagnostics:
package 'survival' 2.39.5 was found, but >= 2.40.1 is required by 'Hmisc'
Execution halted

simmer (3.5.0)

Maintainer: Iñaki Ucar [e-mail] Bug reports: https://github.com/r-simmer/simmer/issues

0 errors | 1 warning | 0 notes

checking compiled code ... WARNING
File ‘simmer/libs/simmer.so’:
  Found ‘_abort’, possibly from ‘abort’ (C)
    Objects: ‘process.o’, ‘resource.o’, ‘simmer_rcpp.o’

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor the system RNG.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.

simmr (0.3)

Maintainer: Andrew Parnell [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘simmr’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/simmr.Rcheck/00install.out’ for details.

sjPlot (2.1.1)

Maintainer: Daniel Lüdecke [e-mail] Bug reports: https://github.com/sjPlot/devel/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘sjPlot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: sjp.scatter
> ### Title: Plot (grouped) scatter plots
> ### Aliases: sjp.scatter
> 
> ### ** Examples
... 37 lines ...
> sjp.scatter(efc$c160age, efc$e17age, efc$e42dep, title = "", 
+             axis.titles = c("", ""))
> 
> # plot text labels
> pl <- c(1:10)
> for (i in 1:10) 
+   pl[i] <- paste(sample(c(0:9, letters, LETTERS), 8, replace = TRUE), collapse = "")
> sjp.scatter(runif(10), runif(10), dot.labels = pl)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

slim (0.1.0)

Maintainer: Daniel Farewell [e-mail]

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 182-190 (slim.Rmd) 
Error: processing vignette 'slim.Rmd' failed with diagnostics:
there is no package called 'jmcm'
Execution halted


checking package dependencies ... NOTE
Packages suggested but not available for checking: ‘jmcm’ ‘gee’

snpEnrichment (1.7.0)

Maintainer: Mickael Canouil [e-mail] Bug reports: https://github.com/mcanouil/snpEnrichment/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘snpStats’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

soc.ca (0.7.3)

Maintainer: Anton Grau Larsen [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘soc.ca-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: add.to.label
> ### Title: Add values to label
> ### Aliases: add.to.label
> 
> ### ** Examples
... 75 lines ...
[10] "Film:\n Comedy"        "Film:\n CostumeDrama"  "Film:\n Documentary"  
[13] "Film:\n Horror"        "Film:\n Musical"       "Film:\n Romance"      
[16] "Film:\n SciFi"         "Art:\n Impressionism"  "Art:\n Landscape"     
[19] "Art:\n ModernArt"      "Art:\n PerformanceArt" "Art:\n Portrait"      
[22] "Art:\n RenaissanceArt" "Art:\n StillLife"      "Eat:\n Fish&Chips"    
[25] "Eat:\n FrenchRest"     "Eat:\n IndianRest"     "Eat:\n ItalianRest"   
[28] "Eat:\n Pub"            "Eat:\n SteakHouse"    
> map.ctr(result.label)
Error: GeomTextRepel was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

sparkTable (1.2.0)

Maintainer: Alexander Kowarik [e-mail] Bug reports: https://github.com/alexkowa/sparkTable/issues

1 error | 0 warnings | 1 note

checking examples ... ERROR
Running examples in ‘sparkTable-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot-methods
> ### Title: Plot objects of class 'sparkline', 'sparkbar', 'sparkhist' or
> ###   'sparkbox'
> ### Aliases: plot plot-methods plot,sparkbar-method plot,sparkbox-method
> ###   plot,sparkline-method plot,sparkhist-method
> 
> ### ** Examples
> 
>   data(pop)
>   x <- pop[pop[,2]=="Insgesamt",3]
>   a <- newSparkLine(values=x, pointWidth=8)
>   plot(a)
Error in theme(legend.position = "none", line = element_blank(), text = element_blank(),  : 
  formal argument "axis.ticks" matched by multiple actual arguments
Calls: plot -> plot -> theme
Execution halted

checking R code for possible problems ... NOTE
plot,sparkbar: possible error in theme(legend.position = "none", line =
  element_blank(), text = element_blank(), title = element_blank(),
  axis.line = element_blank(), axis.ticks = element_blank(),
  legend.background = element_rect(fill = "white", colour = NA),
  plot.background = element_blank(), strip.background =
  element_rect(fill = "white", colour = "white"), panel.margin =
  unit(0, "null"), plot.margin = rep(unit(0, "null"), 4), panel.grid =
  element_blank(), axis.ticks = element_blank(), axis.ticks.length =
  unit(0, "null"), axis.text.x = element_blank(), : formal argument
... 33 lines ...
  axis.line = element_blank(), axis.ticks = element_blank(),
  legend.background = element_rect(fill = "white", colour = NA),
  plot.background = element_blank(), strip.background =
  element_rect(fill = "white", colour = "white"), panel.margin =
  unit(0, "null"), plot.margin = rep(unit(0, "null"), 4), panel.grid =
  element_blank(), axis.ticks = element_blank(), axis.ticks.length =
  unit(0, "null"), axis.text.x = element_blank(), : formal argument
  "axis.ticks" matched by multiple actual arguments
plot,sparkline: possible error in axis.text.y = element_blank(),
  panel.background = element_rect(fill = allColors(x)[4])): formal
  argument "axis.ticks" matched by multiple actual arguments

spcosa (0.3-6)

Maintainer: Dennis Walvoort [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘spcosa’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/spcosa.Rcheck/00install.out’ for details.

specmine (1.0)

Maintainer: Christopher Costa [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘xcms’ ‘MAIT’ ‘genefilter’ ‘impute’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

starmie (0.1.2)

Maintainer: Stuart Lee [e-mail] Bug reports: https://github.com/sa-lee/starmie/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Packages required but not available: ‘iterpc’ ‘label.switching’ ‘MCL’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

StroupGLMM (0.1.0)

Maintainer: Muhammad Yaseen [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘StroupGLMM’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/StroupGLMM.Rcheck/00install.out’ for details.

structSSI (1.1.1)

Maintainer: Kris Sankaran [e-mail]

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘multtest’

Package suggested but not available for checking: ‘phyloseq’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

strvalidator (1.8.0)

Maintainer: Oskar Hansson [e-mail] Bug reports: https://github.com/OskarHansson/strvalidator/issues

1 error | 0 warnings | 0 notes

checking whether package ‘strvalidator’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/strvalidator.Rcheck/00install.out’ for details.

subspaceMOA (0.5.1)

Maintainer: Marwan Hassani [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘subspaceMOA’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/subspaceMOA.Rcheck/00install.out’ for details.

surveillance (1.12.1)

Maintainer: Sebastian Meyer [e-mail] Bug reports: https://r-forge.r-project.org/tracker/?group_id=45

0 errors | 1 warning | 2 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
glrnb: Fitting Poisson model because alpha == 0
... 8 lines ...
Loading required package: parallel
 **********   GAMLSS Version 5.0-0  ********** 
For more on GAMLSS look at http://www.gamlss.org/
Type gamlssNews() to see new features/changes/bug fixes.


Error: processing vignette 'monitoringCounts.Rnw' failed with diagnostics:
 chunk 17 (label = fPlot1) 
Error in theme(axis.line = element_blank(), panel.grid.major = element_blank(),  : 
  formal argument "axis.line" matched by multiple actual arguments
Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘INLA’

checking installed package size ... NOTE
  installed size is  5.6Mb
  sub-directories of 1Mb or more:
    doc   2.2Mb

survminer (0.2.2)

Maintainer: Alboukadel Kassambara [e-mail] Bug reports: https://github.com/kassambara/survminer/issues

1 error | 2 warnings | 1 note

checking examples ... ERROR
Running examples in ‘survminer-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: ggsurvplot
> ### Title: Drawing Survival Curves Using ggplot2
> ### Aliases: ggsurvplot print.ggsurvplot
> 
> ### ** Examples
... 51 lines ...
> 
> # Use brewer color palette "Dark2"
> # Add risk table
> ggsurvplot(fit, linetype = "strata",
+           conf.int = TRUE, pval = TRUE,
+           palette = "Dark2", risk.table = TRUE)
Warning in is.na(x) :
  is.na() applied to non-(list or vector) of type 'NULL'
Error in -x : invalid argument to unary operator
Calls: ggsurvplot ... summary.survfit -> findrow -> find2 -> findInterval
Execution halted

checking Rd cross-references ... WARNING
Missing link or links in documentation object 'ggcoxdiagnostics.Rd':
  ‘ggtheme’

Missing link or links in documentation object 'ggcoxfunctional.Rd':
  ‘ggtheme’

Missing link or links in documentation object 'ggcoxzph.Rd':
  ‘ggtheme’

Missing link or links in documentation object 'ggsurvplot.Rd':
  ‘ggtheme’

See section 'Cross-references' in the 'Writing R Extensions' manual.


checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: ggplot2
Quitting from lines 55-64 (Informative_Survival_Plots.Rmd) 
Error: processing vignette 'Informative_Survival_Plots.Rmd' failed with diagnostics:
there is no package called 'RTCGA.clinical'
Execution halted


checking package dependencies ... NOTE
Package suggested but not available for checking: ‘RTCGA.clinical’

survMisc (0.5.3)

Maintainer: Chris Dardis [e-mail] Bug reports: https://github.com/dardisco/survMisc/issues

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘survMisc-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: autoplotTableAndPlot
> ### Title: Arrange a survival plot with corresponding table and legend.
> ### Aliases: autoplot.tableAndPlot autoplotTableAndPlot
> ### Keywords: graphics
> 
> ### ** Examples
> 
> data("kidney", package="KMsurv")
> autoplot(survfit(Surv(time, delta) ~ type, data=kidney), type="fill")
Warning: Ignoring unknown aesthetics: x, y
Warning: Ignoring unknown aesthetics: x, y
Error in if (is.nan(times1[1])) times1 <- times : 
  argument is of length zero
Calls: autoplot -> autoplot.survfit
Execution halted

tabplot (1.3)

Maintainer: Martijn Tennekes [e-mail]

1 error | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘tabplot-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: tableplot
> ### Title: Create a tableplot
> ### Aliases: tableplot
> ### Keywords: visualization
> 
... 41 lines ...
  font width unknown for character 0x9
> 
> # create a tableplot cut category, and fix scale limits of carat, table, and price
> tabs <- tableplot(p, subset=cut,
+   limitsX=list(carat=c(0,4), table=c(55, 65), price=c(0, 20000)), plot=FALSE)
Error in if (dfile == getOption("fftempdir")) finalizer <- "delete" else finalizer <- "close" : 
  argument is of length zero
Calls: tableplot ... clone.ffdf -> lapply -> FUN -> clone.ff -> assign -> ff
Error in setwd(cwd) : character argument expected
Calls: tableplot ... clone.ffdf -> lapply -> FUN -> clone.ff -> assign -> ff -> setwd
Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Quitting from lines 27-39 (tabplot-timings.Rmd) 
Error: processing vignette 'tabplot-timings.Rmd' failed with diagnostics:
(list) object cannot be coerced to type 'double'
Execution halted

TcGSA (0.10.1)

Maintainer: Boris P. Hejblum [e-mail] Bug reports: https://github.com/borishejblum/TcGSA/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘multtest’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

tcgsaseq (1.0.1)

Maintainer: Boris P. Hejblum [e-mail] Bug reports: https://github.com/denisagniel/tcgsaseq/issues

1 error | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘tcgsaseq-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: voom_weights
> ### Title: Precision weights accounting for heteroscedasticity in RNA-seq
> ###   count data
> ### Aliases: voom_weights
> 
... 7 lines ...
> n <- 12
> p <- 2
> y <- t(sapply(1:G, FUN=function(x){rnbinom(n=n, size=0.07, mu=200)}))
> 
> x <- sapply(1:p, FUN=function(x){rnorm(n=n, mean=n, sd=1)})
> 
> my_w <-  voom_weights(y, x, doPlot=TRUE)
> w_voom <- limma::voom(counts=y, design=x, plot=TRUE) #slightly faster than us. Same results
Error in loadNamespace(name) : there is no package called ‘limma’
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted

checking package dependencies ... NOTE
Package suggested but not available for checking: ‘limma’

checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘limma’

TELP (1.0)

Maintainer: Gabriel Henrique Oliveira Assuncao [e-mail]

1 error | 0 warnings | 0 notes

checking examples ... ERROR
Running examples in ‘TELP-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: telp
> ### Title: The Base Function of This Package The Free Evocation of Words
> ###   Technique
> ### Aliases: telp
> ### Keywords: function
> 
> ### ** Examples
> 
> telp()
Error in structure(.External(.C_dotTclObjv, objv), class = "tclObj") : 
  [tcl] invalid command name "toplevel".
Calls: telp ... tktoplevel -> tkwidget -> tcl -> .Tcl.objv -> structure
Execution halted

toaster (0.5.4)

Maintainer: Gregory Kanevsky [e-mail] Bug reports: https://github.com/teradata-aster-field/toaster/issues

1 error | 0 warnings | 0 notes

checking package dependencies ... ERROR
Package required but not available: ‘RODBC’

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.

trackeR (0.0.4)

Maintainer: Hannah Frick [e-mail] Bug reports: https://github.com/hfrick/trackeR/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: zoo

Attaching package: 'zoo'

The following objects are masked from 'package:base':

    as.Date, as.Date.numeric

Loading required package: ggplot2

Attaching package: 'trackeR'

The following object is masked from 'package:base':

    append

Map from URL : http://maps.googleapis.com/maps/api/staticmap?center=57.157231,-2.104296&zoom=13&size=640x640&scale=2&maptype=terrain&sensor=false
Quitting from lines 90-91 (TourDetrackeR.Rmd) 
Error: processing vignette 'TourDetrackeR.Rmd' failed with diagnostics:
GeomRasterAnn was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

UBL (0.0.5)

Maintainer: Paula Branco [e-mail] Bug reports: https://github.com/paobranco/UBL/issues

1 error | 0 warnings | 0 notes

checking whether package ‘UBL’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/UBL.Rcheck/00install.out’ for details.

UpSetR (1.3.0)

Maintainer: Jake Conway [e-mail] Bug reports: http://github.com/hms-dbmi/UpSetR/issues

0 errors | 1 warning | 1 note

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Warning in readLines(input, encoding = "UTF-8") :
  incomplete final line found on '_output.yaml'
Quitting from lines 77-78 (set.metadata.plots.Rmd) 
Error: processing vignette 'set.metadata.plots.Rmd' failed with diagnostics:
formal argument "axis.title.x" matched by multiple actual arguments
Execution halted


checking R code for possible problems ... NOTE
metadataHeat: possible error in theme(panel.background =
  element_rect("white"), plot.title = element_text(margin = margin(b =
  titleAdjustment), hjust = 0, size = 9.25, angle = 90), plot.margin =
  unit(c(0, 0, 0, 0), "lines"), axis.title.x = element_text(size =
  8.3), legend.position = "none", axis.line = element_blank(),
  axis.line = element_line(colour = "gray0"), axis.line.y =
  element_blank(), axis.line.x = element_line(colour = "gray0", size =
  0.3), axis.text.y = element_blank(), axis.ticks.y = element_blank(),
  axis.title.y = element_blank(), : formal argument "axis.title.x"
... 7 lines ...
  titleAdjustment), hjust = 0, size = 8.3, angle = 90), plot.margin =
  unit(c(0, 0, 0, 0), "lines"), axis.title.x = element_text(size = 7),
  legend.position = "none", axis.line = element_blank(), axis.line =
  element_line(colour = "gray0"), axis.line.y = element_blank(),
  axis.line.x = element_line(colour = "gray0", size = 0.3), axis.text.y
  = element_blank(), axis.ticks.y = element_blank(), axis.title.y =
  element_blank(), : formal argument "axis.title.x" matched by multiple
  actual arguments
metadataText: possible error in axis.text.x = element_blank(),
  axis.ticks.x = element_blank(), axis.title.x = element_blank()):
  formal argument "axis.title.x" matched by multiple actual arguments

userfriendlyscience (0.4-1)

Maintainer: Gjalt-Jorn Peters [e-mail]

1 error | 0 warnings | 2 notes

checking examples ... ERROR
Running examples in ‘userfriendlyscience-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: asymmetricalScatterMatrix
> ### Title: asymmetricalScatterMatrix
> ### Aliases: asymmetricalScatterMatrix
> ### Keywords: misc
> 
> ### ** Examples
> 
> asymmetricalScatterMatrix(infert, cols=c("parity", "age"),
+                           rows=c("induced", "case", "spontaneous"),
+                           showCorrelations="top-right");
Error in theme(axis.text = element_text(colour = "#000000", size = rel(0.8)),  : 
  formal argument "strip.background" matched by multiple actual arguments
Calls: asymmetricalScatterMatrix ... dlvTheme -> %+replace% -> is.theme -> inherits -> theme
Execution halted

checking dependencies in R code ... NOTE
JavaVM: requested Java version ((null)) not available. Using Java at "" instead.
JavaVM: Failed to load JVM: /bundle/Libraries/libserver.dylib
JavaVM FATAL: Failed to load the jvm library.

checking R code for possible problems ... NOTE
didacticPlotTheme: possible error in theme(axis.text =
  element_text(colour = "#000000", size = rel(0.8)), axis.ticks =
  element_line(colour = "black"), legend.text = element_text(size =
  rel(0.6)), legend.key = element_rect(colour = "grey80"),
  legend.position = "top", legend.direction = "horizontal",
  legend.key.size = unit(6, "mm"), panel.background = element_rect(fill
  = "white", colour = NA), panel.border = element_rect(fill = NA,
  colour = "grey50"), panel.grid.major = element_line(colour =
  "grey90", size = 0.2), panel.grid.minor = element_line(colour =
... 13 lines ...
  legend.key.size = unit(6, "mm"), panel.background = element_rect(fill
  = "white", colour = NA), panel.border = element_rect(fill = NA,
  colour = "grey50"), panel.grid.major = element_line(colour =
  "grey90", size = 0.2), : formal argument "strip.background" matched
  by multiple actual arguments
dlvTheme: possible error in panel.grid.minor = element_line(colour =
  "grey98", size = 0.5), strip.background = element_rect(fill =
  "grey80", colour = "grey50"), strip.background = element_rect(fill =
  "grey80", colour = "grey50"), panel.margin = unit(c(0.5), "cm"),
  ...): formal argument "strip.background" matched by multiple actual
  arguments

UsingR (2.0-5)

Maintainer: John Verzani [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘UsingR’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/UsingR.Rcheck/00install.out’ for details.

vdmR (0.2.2)

Maintainer: Tomokazu Fujino [e-mail]

2 errors | 1 warning | 0 notes

checking examples ... ERROR
Running examples in ‘vdmR-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: vhist
> ### Title: Generate histogram with interactive functions
> ### Aliases: vhist
> 
> ### ** Examples
> 
> data(vsfuk2012)
> vhist(FertilityRate, vsfuk2012, "hist1", "vsfuk2012", fill=Type)
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Error in grid.Call.graphics(L_downviewport, name$name, strict) : 
  Viewport 'panel.3-4-3-4' was not found
Calls: vhist ... downViewport -> downViewport.vpPath -> grid.Call.graphics
Execution halted

checking tests ... ERROR
Running the tests in ‘tests/run-all.R’ failed.
Last 13 lines of output:
  Viewport 'panel.3-4-3-4' was not found
  1: vhist(Sepal.Length, iris, "hist01", "iris", fill = Species) at /Users/hadley/Documents/ggplot/ggplot2/revdep/checks/vdmR.Rcheck/vdmR/tests/test-vdmR.R:7
  2: grid::downViewport("panel.3-4-3-4")
  3: downViewport.default("panel.3-4-3-4")
  4: downViewport(vpPath(name), strict, recording = recording)
  5: downViewport.vpPath(vpPath(name), strict, recording = recording)
  6: grid.Call.graphics(L_downviewport, name$name, strict)

  DONE ===========================================================================
  Error: Test failures
  In addition: Warning message:
  Placing tests in `inst/tests/` is deprecated. Please use `tests/testthat/` instead 
  Execution halted

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
`stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
Quitting from lines 40-42 (vdmR-vignette.Rnw) 
Error: processing vignette 'vdmR-vignette.Rnw' failed with diagnostics:
Viewport 'panel.3-4-3-4' was not found
Execution halted

vipor (0.4.4)

Maintainer: Scott Sherrill-Mix [e-mail]

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
Loading required package: sm
Package 'sm', version 2.2-5.4: type help(sm) for summary information
Loading required package: ggplot2
Error: processing vignette 'usageExamples.Rnw' failed with diagnostics:
PositionQuasirandom was built with an incompatible version of ggproto.
Please reinstall the package that provides this extension.
Execution halted

vmsbase (2.1.3)

Maintainer: Lorenzo D'Andrea [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘vmsbase’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/vmsbase.Rcheck/00install.out’ for details.

x.ent (1.1.2)

Maintainer: Tien T. Phan [e-mail] Bug reports: https://github.com/tienpt/x.ent/issues

1 error | 0 warnings | 0 notes

checking whether package ‘x.ent’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/x.ent.Rcheck/00install.out’ for details.

XGR (1.0.4)

Maintainer: Hai Fang [e-mail]

1 error | 0 warnings | 0 notes

checking whether package ‘XGR’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/XGR.Rcheck/00install.out’ for details.

XLConnect (0.2-12)

Maintainer: Martin Studer [e-mail] Bug reports: https://github.com/miraisolutions/xlconnect/issues

1 error | 0 warnings | 0 notes

checking whether package ‘XLConnect’ can be installed ... ERROR
Installation failed.
See ‘/Users/hadley/Documents/ggplot/ggplot2/revdep/checks/XLConnect.Rcheck/00install.out’ for details.

xtractomatic (3.1.1)

Maintainer: Roy Mendelssohn [e-mail] Bug reports: http://www.github.com/rmendels/xtractomatic/issues

0 errors | 1 warning | 0 notes

checking re-building of vignette outputs ... WARNING
Error in re-building vignettes:
  ...
date    lon lat lowLon  higLon  lowLat  higLat
4/23/2003   203.899 19.664  203.899 203.899 19.664  19.664
4/24/2003   204.151 19.821  203.912597  204.389403  18.78051934 20.86148066
4/30/2003   203.919 20.351  203.6793669 204.1586331 18.79728188 21.90471812
5/1/2003    204.229 20.305  203.9943343 204.4636657 18.90440013 21.70559987
Warning: Removed 308 rows containing missing values (geom_path).
Warning: Removed 308 rows containing missing values (geom_path).
Quitting from lines 528-535 (Usingxtractomatic.Rmd) 
Error: processing vignette 'Usingxtractomatic.Rmd' failed with diagnostics:
cannot open the connection
Execution halted

duthedd/ggplot2 documentation built on May 20, 2019, 11:13 a.m.