Man pages for dwinter/Pegas
Population and Evolutionary Genetics Analysis System
| amova | Analysis of Molecular Variance |
| bind.loci | Bind Loci Objects |
| conversion | Conversion Among Allelic Data Classes |
| edit.loci | Edit Allelic Data with R's Data Editor |
| Fst | F-Statistics |
| haploNet | Haplotype Networks |
| haplotype | Haplotype Extraction and Frequencies |
| heterozygosity | Heterozygosity at a Locus Using Gene Frequencies |
| hw.test | Test of Hardy-Weinberg Equilibrium |
| MMD | Mismatch Distribution |
| nuc.div | Nucleotide Diversity |
| pegas-package | Population and Evolutionary Genetics Analysis System |
| R2.test | Ramos-Onsins-Rozas Test of Neutrality |
| read.gtx | Read Genetix Data Files |
| read.loci | Read Allelic Data Files |
| rr.test | Tajima Relative Rate Test of Molecular Clock |
| site.spectrum | Site Frequency Spectrum |
| summary.loci | Print and Summaries of Loci Objects |
| tajima.test | Test of the Neutral Mutation Hypothesis |
| theta.h | Population Parameter THETA using Homozygosity |
| theta.k | Population Parameter THETA using Expected Number of Alleles |
| theta.s | Population Parameter THETA using Segregating Sites |
| theta.tree | Population Parameter THETA Using Genealogy |
| utilities | Utily Functions for pegas |
| write.loci | Write Allelic Data Files |
