read.gtx: Read Genetix Data Files
In dwinter/Pegas: Population and Evolutionary Genetics Analysis System
Description
Usage
Arguments
Value
Note
Author(s)
References
See Also
Examples
Description
This function reads allelic data from a Genetix file (.gtx).
Usage
1
Arguments
file
a file name specified by either a variable of mode character
or a quoted string.
Value
A data frame with class c("loci", "data.frame").
Note
The package adegenet has a similar function,
read.genetix, but it returns an object of
class "genind".
Author(s)
Emmanuel Paradis
References
Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N. and Bonhomme,
F. (1996–2004) GENETIX 4.05, logiciel sous Windows(TM) pour la
genetique des populations. Laboratoire Genome, Populations,
Interactions, CNRS UMR 5000, Universite de Montpellier II, Montpellier
(France). http://www.genetix.univ-montp2.fr/genetix/intro.htm
See Also
read.loci, write.loci,
read.genetix
Examples
1
2
3
require(adegenet)
(X <- read.gtx(system.file("files/nancycats.gtx", package = "adegenet")))
## compare with the example in ?read.genetix
dwinter/Pegas documentation built on May 15, 2019, 6:21 p.m.
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Description Usage Arguments Value Note Author(s) References See Also Examples
Description
This function reads allelic data from a Genetix file (.gtx).
Usage
1 |
Arguments
file |
a file name specified by either a variable of mode character or a quoted string. |
Value
A data frame with class c("loci", "data.frame").
Note
The package adegenet has a similar function,
read.genetix, but it returns an object of
class "genind".
Author(s)
Emmanuel Paradis
References
Belkhir, K., Borsa, P., Chikhi, L., Raufaste, N. and Bonhomme, F. (1996–2004) GENETIX 4.05, logiciel sous Windows(TM) pour la genetique des populations. Laboratoire Genome, Populations, Interactions, CNRS UMR 5000, Universite de Montpellier II, Montpellier (France). http://www.genetix.univ-montp2.fr/genetix/intro.htm
See Also
read.loci, write.loci,
read.genetix
Examples
1 2 3 | require(adegenet)
(X <- read.gtx(system.file("files/nancycats.gtx", package = "adegenet")))
## compare with the example in ?read.genetix
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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