build_network | build_network constructs weighted neighborhood network |
color_code_node_2 | color_code_node_2 plot state transition network in which... |
find_optimal_cluster_number | find_optimal_cluster_number identifies the optimal number of... |
heatmap_nbor | heatmap_nbor plot heatmap of gene expression |
landmark_designation | landmark_designation clusters cells and determines landmark... |
Mpath-package | Mpath: an analysis algorithm that maps multi-branching... |
nbor_order | nbor_order sorts individual cells according to their various... |
pseudotimePlotByGenes | pseudotimeplotByGenes |
QC_gene | QC_gene removes genes that have TPM values < 1 in more than... |
SC_anova | SC_anova run ANOVA test to identify differentially expressed... |
SC_hc | SC_hc hierachical clustering of single cells |
SC_hc_colorCode | SC_hc_colorCode hierarchical clustering of single cells,... |
trim_net | trim_net trimms the weighted neighborhood network by removing... |
vgam_deg | vgam_deg identifies genes that were differentially expressed... |
vgam_perGene | vgam_perGene determines if a gene is differentially expressed... |
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