|build_network||build_network constructs weighted neighborhood network|
|color_code_node_2||color_code_node_2 plot state transition network in which...|
|find_optimal_cluster_number||find_optimal_cluster_number identifies the optimal number of...|
|heatmap_nbor||heatmap_nbor plot heatmap of gene expression|
|landmark_designation||landmark_designation clusters cells and determines landmark...|
|Mpath-package||Mpath: an analysis algorithm that maps multi-branching...|
|nbor_order||nbor_order sorts individual cells according to their various...|
|QC_gene||QC_gene removes genes that have TPM values < 1 in more than...|
|SC_anova||SC_anova run ANOVA test to identify differentially expressed...|
|SC_hc||SC_hc hierachical clustering of single cells|
|SC_hc_colorCode||SC_hc_colorCode hierarchical clustering of single cells,...|
|trim_net||trim_net trimms the weighted neighborhood network by removing...|
|vgam_deg||vgam_deg identifies genes that were differentially expressed...|
|vgam_perGene||vgam_perGene determines if a gene is differentially expressed...|
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