revdep/problems.md

In dynverse/dynutils: Common Functionality for the 'dynverse' Packages

lmds

• Version: 0.1.0
• GitHub: https://github.com/dynverse/lmds
• Source code: https://github.com/cran/lmds
• Date/Publication: 2019-09-27 09:10:02 UTC
• Number of recursive dependencies: 47

Run revdep_details(, "lmds") for more info

Newly broken

• checking examples ... ERROR ``` Running examples in ‘lmds-Ex.R’ failed The error most likely occurred in:

  Name: cmdscale_landmarks

  Title: Perform MDS on landmarks and project other samples to the same

  space

  Aliases: cmdscale_landmarks

  ** Examples

  ... x <- as.matrix(iris[,1:4]) dist_2lm <- select_landmarks(x) cmdscale_landmarks(dist_2lm) Warning in irlba(x, n, ...) : convergence criterion below machine epsilon Warning in irlba(x, n, ...) : did not converge--results might be invalid!; try increasing work or maxit Error in if (all(s > 0)) { : missing value where TRUE/FALSE needed Calls: cmdscale_landmarks -> Execution halted ```

• checking tests ... ``` Running ‘testthat.R’ ERROR Running the tests in ‘tests/testthat.R’ failed. Last 13 lines of output: 14/22500 mismatches (average diff: NaN) [903] 0 - NaN == NaN [1171] 0 - NaN == NaN [1524] 0 - NaN == NaN [4194] 0 - NaN == NaN [7804] 0 - NaN == NaN [8911] 0 - NaN == NaN [10452] 0 - NaN == NaN [12188] 0 - NaN == NaN [13271] 0 - NaN == NaN ...

  [ FAIL 7 | WARN 8 | SKIP 0 | PASS 11 ] Error: Test failures Execution halted ```

In both

• checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘Matrix’ All declared Imports should be used.

• checking LazyData ... NOTE 'LazyData' is specified without a 'data' directory

dynverse/dynutils documentation built on Oct. 10, 2022, 2:06 p.m.