README.md

In dyxmvp/seqExplorer: Single-cell data analysis

seq-Explorer

Integrated and interactive software for single-cell RNA-seq data analysis.

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1. Installation

These instructions will get you a copy of the software up and running on HPC or local machine.

Prerequisites

R (>= 3.4)
Drop-seq_tools (>= 2.0)
Seurat (>= 2.3)

Installing

-> To install from R or Rstudio, run the following code:

(1) First, install package “devtools”:

if (!require("devtools"))
  install.packages("devtools")

(2) Then, install seqExplorer:

devtools::install_github('dyxmvp/seqExplorer')

-> To install from HPC, see this guide for more details.

2. Getting Started

Enter commands in R or R studio:

library(seqExplorer)
seqExplorer()

3. License

seq-Explorer is developed and maintained by Yanxiang Deng@Rong Fan Lab, BME, Yale University. The software is licensed under the GPL-3.0. See the LICENSE file for more details.

4. Contact

seq-Explorer is hosted at Github. Please e-mail [e-mail] or submit pull requests from the Github with any questions about the software.

dyxmvp/seqExplorer documentation built on Aug. 22, 2020, 10:41 p.m.