junctions_example: Set of example junctions

In dzhang32/dasper: Detecting abberant splicing events from RNA-sequencing data

Set of example junctions

Description

A dataset containing the example junction data for 2 case and 3 control samples outputted from junction_load. The junctions have been filtered for only those lying on chromosome 21 or 22.

Usage

junctions_example

Format

RangedSummarizedExperiment-class object from SummarizedExperiment detailing the counts, co-ordinates of junctions lying on chromosome 21/22 for 2 example samples and 3 controls:

assays

matrix with counts for junctions (rows) and 5 samples (cols)

colData

example sample metadata

rowRanges

GRanges-class object describing the co-ordinates and strand of each junction

Source

generated using data-raw/junctions_example.R

dzhang32/dasper documentation built on April 3, 2022, 3:36 p.m.