In dzhang32/rutils: `rutils` is a home for my commonly used R utility functions

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  crop = NULL ## Related to https://stat.ethz.ch/pipermail/bioc-devel/2020-April/016656.html
)

## Track time spent on making the vignette
startTime <- Sys.time()

## Bib setup
library("knitcitations")

## Load knitcitations with a clean bibliography
cleanbib()
cite_options(hyperlink = "to.doc", citation_format = "text", style = "html")

## Write bibliography information
bib <- c(
  R = citation(),
  BiocStyle = citation("BiocStyle")[1],
  knitcitations = citation("knitcitations")[1],
  knitr = citation("knitr")[1],
  rmarkdown = citation("rmarkdown")[1],
  sessioninfo = citation("sessioninfo")[1],
  testthat = citation("testthat")[1],
  rutils = citation("rutils")[1]
)

write.bibtex(bib, file = "rutils.bib")

Basics

Install rutils

if (!requireNamespace("BiocManager", quietly = TRUE)) {
  install.packages("BiocManager")
}

BiocManager::install("rutils")

## Check that you have a valid Bioconductor installation
BiocManager::valid()

Quick start to using to rutils

This is a package designed for personal use only. If you do would like to use rutils::docker_run_rserver(), I have created a guide you may find useful.

Reproducibility

## Session info
library("sessioninfo")
options(width = 120)
session_info()

dzhang32/rutils documentation built on Feb. 10, 2022, 9:12 p.m.