NEWS.md

In earnaud/MetaShARK-v2: metashark

V1.7.0 (pre-release)

Features

• Style enhanced

• Personnel step reworked

• Navigation issues fixed

• Geospatial custom coverage support

Work in progress

• MetaFIN: continue dev-metafin branch

• Annotations: add annotations module

• Tests: continue writing tests

V1.6.1

Features

• Fixed navigation error when clicking 'previous' in EAL.

• Added a counter for the number of users, outputting in the logs.

• New styles and display for enhanced graphic UI.

• Custom geographic coverage now includes drawing tool.

• Geographic coverage now supports .shp files.

• Fixed EAL 8

• Updated Docker (thanks to https://github.com/charlycou)

Work in progress

• Tests: write a complete set of tests.

• Bugs: many were spotted, many more to fix.

• Annotations: continue dev-metafin branch.

• Geospatial data: integration of EAL progress.

v1.6.0

Features

• Fixed DataOne nodes list

• Increased file input limit to 2 Go

• Added this NEWS file.

• Upgrade to R4.1.0: removed {emldown} dependency for compatibility motives.

• Setup {shinytest} tests functionnal.

• Fixed unit load on Attributes.

• Fixed better UI for method selection in geographic coverage step.

• Fixed marked ORCID input as facultative in personnel step.

• Fixed revised unit list.

• Fixed revised custom unit list.

Work In progress

• Tests: set a complete set of tests.

• Upload: make data packages be fully uploaded.

• Annotations: continue dev-metafin branch.

v1.5.3

• NOTE: two tags were released because of a non-updated archive in 1.5.2.

• stable version (v1.5.1-stable).

• MetaFIN: add xml handling utils.

• Fixed Categorical variables fails to save.

• Fixed Taxonomic Coverage templating on "previous".

• Fixed Corrected one-file handling.

v1.5.1 : Spring update

• Set file upload max size to 50 Mb.

• Added {profvis} support.

• Fixed checks for categorical variables templating

• Fixed Taxonocmic Coverage initialization

• Fixed attributes tree, now starts opened

• Fixed attributes & categorical variables trees renders

v1.5 : Winter Production

• Added interest ontologies list as resource

• Added a way to use MetaShARK in locale with Docker.

• Initialized MetaFIN.

• Fixed attributes. Other impacted steps have been edited

• Fixed missing value detection.

v1.4 : Summer production

• Started tests support with {shinytest} - not achieved

• Improved excel files support: no support further than the first sheet.

• R/ files were renamed.

• Save method improved

• ORCID support (miscellaneous module)

• First step with annotations (see {cedarr})

• WIP mode (display WIP features or not)

• variables refactored around main.env reactive values

• support for shiny 1.5

• Added log messages

• Added colorized feedbacks

• Added attributes content preview

• Fixed xcel support: multi-sheet support

• Fixed latitude/longitude input + next/previous unexpected behavior (moved more than one step)

• Fixed app freeze on launch

• Fixed zip download in DP selection

• Fixed upload module and registered endpoints

v1.3 : Good gui MetaShARK

• Added emldown generation

• Added quick mode to populate inputs upon coming on a module

• Added LICENSE

• Added helpers to each Fill-In module

• Set save method to JSON format

• Fixed upload module

v1.2 : EML Assembly Line Update - beta-test version

• Changed files organizations for best practices compliance

• Dockerization of the app (https://hub.docker.com/repository/docker/eliearnaud/metashark)

• Revised workflow

• Download data packages from Select Data Packages page.

• Added dev server address (used with OpenGenOuest, no more in use)

• Added markdown support for Miscellaneous step

• Prettified modules organization

• Published in Zenodo

• Fixed ShinyFiles/Shiny correction according to local/server usage

• Fixed image display without using 'renderImage()' method

• Fixed make make_eml().

1.1 : EML Assembly Line Update - alpha version

• added CSS styles

• code documentation has been set with {roxygen} syntax

• upload module is ready (some part is still in dev)

• EML-ready data packages can be uploaded, with conditions (soon fixed):only text/csv, files, no scripts, only on PNDB metacat

• Attributes module finished (with custom units)

• Categorical Variables are being worked

• Added Geographic Coverage facultative module with2 methods: columns selection (choose latitude and longitude columns among your dataset) and custom edition (describe each site one by one if you don't have yet a file).

• module CustomUnits is functional

• Update GO FAIR bibtex ref as a package internal data

• Fixed troubles accessing package data

Initial git setup

• Reused git parts from archived earnaud/MetaShARK

• Organized code and internal data to be used as an R package

• Set dev buttons. Run: runMetashark(dev = TRUE) to get access to dev buttons (allowing to browse in middle of the code). dev=FALSE is to use for presentation purposes but is set as default.

• Modified way to install MetaShARK

earnaud/MetaShARK-v2 documentation built on Sept. 21, 2022, 10:52 a.m.