Description Usage Arguments Value Examples
Read an XML config from an Expression Atlas experiment and create a list containing information on the analytics and assay group elements detailed therein.
1 | parseAtlasConfig( atlasXMLconfigFile )
|
atlasXMLconfigFile |
Path to the Expression Atlas XML config file. |
A list with two elements: the experiment type, and a list of all Analytics elements found in the XML config file.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | ## Not run:
# Path to atlas XML config file.
atlasXMLconfigFile <- system.file( "extdata", "E-MTAB-1066-configuration.xml", package = "ExpressionAtlasInternal" )
# Parse the config file into a list
parsedXMLlist <- parseAtlasConfig( atlasXMLconfigFile )
# Get the experiment type
atlasExperimentType <- parsedXMLlist$experimentType
# Get the Analytics objects (which contain AssayGroups)
allAnalytics <- parsedXMLlist$allAnalytics
## End(Not run)
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