Man pages for econtijoch/FaithLabTools
R Scripts for Faith Lab @ MSSM
| dilution_calculation | Dilution calculator |
| EJC_colors | Color Scheme function for plotting |
| Example_BR_samples_raw | Raw Fluorescence data for the plate measured with Broad-Range... |
| Example_Bruker_biotyper_html_file | Bruker Biotyper sample output html file |
| Example_empty_weights | Empty tube weight file |
| Example_full_weights | Full tube weight file |
| Example_HS_samples_raw | Raw Fluorescence data for the plate measured with... |
| Example_mapping_file | Mapping file for samples in microbial density experiment |
| Example_matrix_plate_scan | Tube Order from 96-well format barcode scanner (.csv) |
| Example_other_data | Fully processed other data (.csv) |
| Example_pcr_1_data | Raw Fluorescence data for the plate containing pcr product... |
| Example_pcr_1_map | Mapping file for the plate containing pcr product... |
| Example_pcr_2_data | Raw Fluorescence data for the plate containing pcr product... |
| Example_pcr_2_map | Mapping file for the plate containing pcr product... |
| Example_pcr_3_data | Raw Fluorescence data for the plate containing pcr product... |
| Example_pcr_3_map | Mapping file for the plate containing pcr product... |
| Example_pcr_4_data | Raw Fluorescence data for the plate containing pcr product... |
| Example_pcr_4_map | Mapping file for the plate containing pcr product... |
| Example_pcr_stds_data | Raw Fluorescence data for the plate containing pcr product... |
| Example_sample_info | Sample Info for samples in microbial density experiment |
| Example_standards_raw | Raw Fluorescence data for the plate containing standards |
| faith_lab_theme | Theme function for plotting paper-ready figures |
| faith_lab_theme_tilted | Theme function for plotting paper-ready figures with tilted... |
| FaithLabTools | FaithLabTools: A package containing helper functions for use... |
| geom_mean_sem | New layer function that plots both the summary statistics AND... |
| geom_median | New layer function that plots both the summary statistics AND... |
| ggname | ggname Helper function taken from ggplot2 - not exported,... |
| index_mapping_16S | Table containing 16S indexes (barcodes) |
| index_mapping_metagenomics | Table containing metagenomic sequencing indexes from IDT... |
| level_reorder | Reorder factor levels |
| make_example_files | Function to generate sample data files to work wtih locally |
| mass_and_order | Generate sample mass and final order of tubes. Will attempt... |
| matrix_plate_parser | Matrix plate parser |
| measure_dna_concentration | Measure DNA concentration for using qubit to quantify DNA |
| plate_mapping_96_384 | Table to help map four 96-well plate locations to one 384... |
| qubit_merger | Function to improve accuracy of DNA measurements for samples... |
| read_bruker_file | Read Bruker Biotyper data into data table |
| read_plate | Function to read in mapping file and tweak format so that it... |
| read_sample_info | Function to read in sample info from a file (excel or .csv) |
| robot_equal_combine | Robot equal combine |
| stat_mean_sem | Layer function for stat |
| stat_median | Layer function for stat |
| well_number_to_location | Well number to location. Changes well number (e.g. 1, 2, 3,... |
| well_parser | Function to toggle between a well ID and a well location... |
