In eeholmes/CoV19: Eli's package for figures and data on CoV-19 epidemic

This is a package for exploring some of the CoV-19 data. The world data is downloaded from JHU. The US data is downloaded from JHU and CovidTracking. The Italy data is downloaded from the Italian CDC (Protezione Civile)

Sources:

• https://github.com/CSSEGISandData/COVID-19
• https://covidtracking.com/api/
• https://github.com/pcm-dpc/COVID-19

To install the package

library(devtools)
install_github("eeholmes/CoV19")

To get the data, type any of these on command line. After loading.

states
italy
world

Use head() to look at it. Should be pretty self-evident what it is.

Functions

• regions() will show you the regions in each data set.
• plot2() a basic plot of total, hospitalized, and deaths. First argument is a data object (states, italy, world or subset of these) and second argument is a region (can be partial). Use ?plot2 to read the help page.

Plots

library(CoV19)
plot2(italy, "Lomb", decorate=TRUE)

plot2(states, c("WA","CA"))

plot2(states, c("NY","NJ","PA","MA"))

Something is odd with the Hubei data in the JHU data set.

plot2(world, "Hubei China", decorate=TRUE)

eeholmes/CoV19 documentation built on Oct. 19, 2021, 10:59 a.m.