Sim_Active_Infections: Simulate Active Infections

In egetzen5/RpCS: Reproduces Covid19 Simulations from Xi (2020)

Description

Simulate Active Infections

Usage

Sim_Active_Infections(
  dat1 = StandardData,
  dat2 = EarlyIntervention,
  dat3 = LowerRate,
  MU1 = 4,
  MU2 = 3.6,
  size1 = 1,
  size2 = 0.9,
  parallel = FALSE,
  max_iter = 5
)

Arguments

dat1	Standard infection pattern (vector) for black barplot
dat2	Comparison infection pattern (vector) for blue barplot
dat3	Comparison infectin pattern (vector) for red barplot
MU1	expected time (integer) to getting infected for 1st column
MU2	expected time (integer) to getting infected for 2nd column
size1	Dispersion parameter (integer) for negative binomial distribution so that var = MU + MU^2/size (first column)
size2	Dispersion parameter (integer) for negative binomial distribution so that var = MU + MU^2/size (second column)
parallel	Option to parallelize simulation replicates
max_iter	number if iterations for replicates

Value

2 x 3 barplots comparing daily active infections for different infection rates and different parameters (MU and size).

Examples

Sim_Active_Infections(dat1 = StandardData,dat2 = EarlyIntervention,dat3 = LowerRate,MU1=4,MU2 = 3.6,size1=1,size2=0.9,parallel = FALSE,max_iter=5 )

egetzen5/RpCS documentation built on Dec. 20, 2021, 3:22 a.m.