process_drug_target_interactions: Process Drug-Target Interactions

In egeulgen/PANACEA: Personalized Network-Based Anti-Cancer Therapy Evaluation

Process Drug-Target Interactions

Description

Process Drug-Target Interactions

Usage

process_drug_target_interactions(
  drug_target_interactions,
  PIN_genes,
  drug_name_col = "drug_name",
  target_col = "gene_name"
)

Arguments

drug_target_interactions	data frame containing drugs and target genes
PIN_genes	gene symbols for the chosen PIN
drug_name_col	name of the column containing drug names (default = "drug_name")
target_col	name of the column containing drug targets (default = "converted_target_gene")

Value

processed drug-target interactions. Processing involves converting symbols missing in the PIN, merging drugs that have the same target gene(s)

egeulgen/PANACEA documentation built on Aug. 20, 2023, 7:28 a.m.