map: Converts one identifier into other identifiers for the given...

In egonw/BridgeDbR: Code for using BridgeDb identifier mapping framework from within R

Converts one identifier into other identifiers for the given target data source.

Description

Converts one identifier into other identifiers for the given target data source.

Usage

map(mapper, source, identifier, target, compactIdentifier)

Arguments

mapper	loaded BridgeDb identifier mapper
source	system code of the data source
identifier	identifier to be converted
target	system code of the target data source (optional)
compactIdentifier	the Bioregistry.io compact identifier to convert

Value

mappings

a data frame of mapped identifiers for the target data source

Author(s)

Egon Willighagen

Examples

## Not run: 
location <- getDatabase("Bacillus subtilis")
mapper <- loadDatabase(location)
map(mapper, "En", "BSn5_00025", "S")
map(mapper, "En", "BSn5_00025")
location <- getDatabase("Homo sapiens")
mapper <- loadDatabase(location)
map(mapper, "En", "ENSG00000139618")
map(mapper, compactIdentifier="uniprot:P51587")

## End(Not run)

egonw/BridgeDbR documentation built on Nov. 8, 2024, 4:21 a.m.