LMK_plotoutliers: Plot Outliers

In ehrlichd/lmkCHK: Tools to Visualize and Screen 2D/3D Landmark Data

Description

Function to identify outliers visually

Usage

LMK_plotoutliers(A, gpa = TRUE, plotALL = TRUE, ...)

Arguments

A	Raw 3D coordinate data, procrustes aligned coordinate data, or an object of class == gpagen
gpa	Logical, should a GPA be calculated. If TRUE, A is assumed to be raw coordinate data and GPA is implemented via geomorph::gpagen. If FALSE, no imposition will be done. If TRUE, gpa-aligned coordinates and mshape will also be exported
plotALL	Logical, plot all specimens (and mean) in 3D space
...	Additional parameters to pass to gpagen

Value

Returns a list containing summary information of the dataset, individual procrustes distances, GPA aligned Procrustes Coordinates and mean shape configuration

Examples

require(geomorph)
data(scallops)

outliers <- LMK_plotoutliers(scallops$coorddata, plotALL = FALSE) ## skip 3D plot
outliers$summary.info

ehrlichd/lmkCHK documentation built on Sept. 30, 2020, 3:06 a.m.